View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4954_high_14 (Length: 306)
Name: NF4954_high_14
Description: NF4954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4954_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 1737581 - 1737885
Alignment:
| Q |
1 |
cgtatcatcaccaacttcttattgataagactcattcacagttggttcttgagcaaactataatagaattaccacccacgcatttggttcttgcacatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1737581 |
cgtatcatcaccaacttcttattgataagactcattcacagttggttcttgagcaaactataatagaattaccacccacgcatttggttcttgcacatca |
1737680 |
T |
|
| Q |
101 |
tcatccacagcaacattataatgaggaccccaaaacaacaactaattttttaggtcaactgataatcatctattgcataaataaatccttataacaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1737681 |
tcatccacagcaacattataatgaggaccccaaaacaacaactaattttttaggtcaactgataatcatctattgcataaataaatccttataacaatca |
1737780 |
T |
|
| Q |
201 |
acaacaannnnnnngtgatcgctaaaattatgctgtgattcaaaccccaccaagacactaaaataaacctagacttgaaaacccctaaataaaaatactt |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1737781 |
acaacaatttttttgtgatcgctaaaattatgctgtgattcaaacccgaccaagacactaaaataaacctagacttgaaaacccctaaataaaaatactt |
1737880 |
T |
|
| Q |
301 |
gtagc |
305 |
Q |
| |
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||||| |
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| T |
1737881 |
gtagc |
1737885 |
T |
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