View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4954_high_15 (Length: 300)
Name: NF4954_high_15
Description: NF4954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4954_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 23 - 297
Target Start/End: Original strand, 32894564 - 32894840
Alignment:
| Q |
23 |
cataatatatgcaaggtcggggttcaaaccttagccat--ttgtaatggcctttcgtcgcaccataattttgctcattgttaaaatggagaaaaacagta |
120 |
Q |
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| T |
32894564 |
cataatatattcaaggtctgggttcaaaccttagccatggtcgtaatggccttccgtggcagcataattttgctcattgttaaaatggagaaaaacagta |
32894663 |
T |
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| Q |
121 |
accggccttacctttatgtggcaaccttgaatagaacattgatcacaattgtactggttgtttttcttgcagaagtttaagaccaaagctgaccttgtat |
220 |
Q |
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| T |
32894664 |
accggctttacctttatgtggcaaccttgaatagaacattgatcacaattgtactggttgtttttcttgcagaagtgtaagaccaaagctgaccttgtat |
32894763 |
T |
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| Q |
221 |
ctttttatggaaatttttctcctttcagcgttcgggtaagaacaaaaagattatgctattacactgtctgtatataa |
297 |
Q |
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| T |
32894764 |
ctttttatggaaatttttctcctttcagcgttcgggtaagaacaaaaagattatgctattacactgtctgtatataa |
32894840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 266
Target Start/End: Original strand, 32934247 - 32934346
Alignment:
| Q |
167 |
aattgtactggttgtttttcttgcagaagtttaagaccaaagctgaccttgtatctttttatggaaatttttctcctttcagcgttcgggtaagaacaaa |
266 |
Q |
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| T |
32934247 |
aattgtacttgttgtttttcttgcagaagtgcaagaccaaagctgacatttgctcttttggtggagatttttgtgctttcagcattagggtaagaacaaa |
32934346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 32950206 - 32950316
Alignment:
| Q |
151 |
atagaacattgatcacaattgtactggttgtttttcttgcagaagtttaagaccaaagctgaccttgtatctttttatggaaatttttctcctttcagcg |
250 |
Q |
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| T |
32950206 |
atagaacattcatcacaatagtact---tgtttttcttgcagaagtgtaagaccaaagctgacatttgctctctttggggaaatttttgttctttcagtg |
32950302 |
T |
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| Q |
251 |
ttcgggtaagaaca |
264 |
Q |
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| T |
32950303 |
ttagggtaagaaca |
32950316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 32883839 - 32883923
Alignment:
| Q |
182 |
ttttcttgcagaagtttaagaccaaagctgac-cttgtatctttttatggaaatttttctcctttcagcgttcgggtaagaacaaa |
266 |
Q |
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| T |
32883839 |
ttttcttgcagaagtttaagaccaaagctgacacttgt-tctttttatggaaatatttgtgctttctttgttagggtaagaacaaa |
32883923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 19505062 - 19504973
Alignment:
| Q |
177 |
gttgtttttcttgcagaagtttaagaccaaagctgaccttgtatctttttatggaaatttttctcctttcagcgttcgggtaagaacaaa |
266 |
Q |
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| T |
19505062 |
gttgtttctcttgcagaaatgtaagaccaaagctgacattttctctatttatggaattttttgtgcttgcagtgttagggtaagcacaaa |
19504973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 32918184 - 32918285
Alignment:
| Q |
165 |
acaattgtactggttgtttttcttgcagaagtttaagaccaaagctgaccttgtatctttttatggaaatttttctcctttcagcgttcgggtaagaaca |
264 |
Q |
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||||||| ||| ||| |||||||||||||| ||||||| |||||||| || ||||||||||||||||| | | ||||| ||| ||||||||||| |
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| T |
32918184 |
acaattgcacttgttatttttcttgcagaaaagtaagacccaagctgacttttgctctttttatggaaatttctgtgctttctttgttagggtaagaaca |
32918283 |
T |
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| Q |
265 |
aa |
266 |
Q |
| |
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|| |
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| T |
32918284 |
aa |
32918285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 45088906 - 45088935
Alignment:
| Q |
23 |
cataatatatgcaaggtcggggttcaaacc |
52 |
Q |
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| T |
45088906 |
cataatatatgcaaggtcggggttcaaacc |
45088935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 48065232 - 48065260
Alignment:
| Q |
23 |
cataatatatgcaaggtcggggttcaaac |
51 |
Q |
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| T |
48065232 |
cataatatatgcaaggtcggggttcaaac |
48065260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 11720924 - 11720953
Alignment:
| Q |
23 |
cataatatatgcaaggtcggggttcaaacc |
52 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11720924 |
cataatatatgcaaggtcggggttcaaacc |
11720953 |
T |
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