View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4954_high_1_N (Length: 833)

Name: NF4954_high_1_N
Description: NF4954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4954_high_1_N
NF4954_high_1_N
[»] chr5 (7 HSPs)
chr5 (284-833)||(38816178-38816727)
chr5 (474-623)||(38821782-38821928)
chr5 (755-812)||(22423764-22423822)
chr5 (753-802)||(8420075-8420124)
chr5 (755-807)||(9929668-9929720)
chr5 (753-783)||(24906250-24906280)
chr5 (694-732)||(35665559-35665597)
[»] chr3 (4 HSPs)
chr3 (1-230)||(34899746-34899975)
chr3 (753-791)||(4466538-4466576)
chr3 (753-783)||(5440965-5440995)
chr3 (753-791)||(13807237-13807275)
[»] chr1 (1 HSPs)
chr1 (755-808)||(48547938-48547991)
[»] scaffold0168 (3 HSPs)
scaffold0168 (755-816)||(21217-21278)
scaffold0168 (755-816)||(21088-21149)
scaffold0168 (755-816)||(21346-21407)
[»] chr6 (4 HSPs)
chr6 (755-802)||(426478-426525)
chr6 (755-802)||(5732474-5732521)
chr6 (753-783)||(34073276-34073306)
chr6 (755-796)||(2117134-2117175)
[»] chr2 (5 HSPs)
chr2 (755-802)||(19536361-19536408)
chr2 (755-802)||(19574031-19574078)
chr2 (756-802)||(18255945-18255991)
chr2 (756-802)||(34691770-34691816)
chr2 (756-802)||(34714182-34714228)
[»] chr7 (1 HSPs)
chr7 (754-783)||(17852091-17852120)


Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 284 - 833
Target Start/End: Original strand, 38816178 - 38816727
Alignment:
Q  284 tcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaac 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816178 tcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaac 38816277  T
Q  384 agacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaag 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816278 agacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaag 38816377  T
Q  484 aacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttc 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816378 aacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttc 38816477  T
Q  584 cacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgaga 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816478 cacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgaga 38816577  T
Q  684 cttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaagcacggacactcctcgaattag 783  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38816578 cttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaatcacggacactcctcgaattag 38816677  T
Q  784 ccatgtccgacaccgacaccacaccgacacataattataatgaaatatag 833  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38816678 ccatgtccgacaccgacaccacaccgacacataattatactgaaatatag 38816727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 474 - 623
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
Q  474 aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa 573  Q
    |||||||||||||||| |||||  ||| ||||||| ||   ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |    
T  38821782 aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca 38821878  T
Q  574 ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca 623  Q
      ||||  |||||||||||||| |||||||||||||||| ||||||||||    
T  38821879 ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca 38821928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 755 - 812
Target Start/End: Original strand, 22423764 - 22423822
Alignment:
Q  755 ctatgaagcacggacactcctcgaattagccatgtcc-gacaccgacaccacaccgaca 812  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||||||||| |||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtccagacaccgacacgacaccgaca 22423822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 753 - 802
Target Start/End: Complemental strand, 8420124 - 8420075
Alignment:
Q  753 aactatgaagcacggacactcctcgaattagccatgtccgacaccgacac 802  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||||||    
T  8420124 aactatgaagcacggatactcctcgaattaggcgcgtccgacaccgacac 8420075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 755 - 807
Target Start/End: Complemental strand, 9929720 - 9929668
Alignment:
Q  755 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacac 807  Q
    ||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||    
T  9929720 ctatgaagcacagacactcctcgaattagtcgtgtccgataccgacacgacac 9929668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 753 - 783
Target Start/End: Original strand, 24906250 - 24906280
Alignment:
Q  753 aactatgaagcacggacactcctcgaattag 783  Q
    |||||||||||||||||||||||||||||||    
T  24906250 aactatgaagcacggacactcctcgaattag 24906280  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 694 - 732
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
Q  694 aaggtgtgtccagtgtccaacagatgtcagtctccaaca 732  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  35665559 aaggtgtgtccagtgtccaacacatgtcagtttccaaca 35665597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 230; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34899975 - 34899746
Alignment:
Q  1 atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899975 atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa 34899876  T
Q  101 attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899875 attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt 34899776  T
Q  201 atgtgaatttgtgcagatgatatcactgac 230  Q
    ||||||||||||||||||||||||||||||    
T  34899775 atgtgaatttgtgcagatgatatcactgac 34899746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 753 - 791
Target Start/End: Original strand, 4466538 - 4466576
Alignment:
Q  753 aactatgaagcacggacactcctcgaattagccatgtcc 791  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  4466538 aactatgaagcacggacactcctcgaataagccgtgtcc 4466576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 753 - 783
Target Start/End: Original strand, 5440965 - 5440995
Alignment:
Q  753 aactatgaagcacggacactcctcgaattag 783  Q
    |||||||||||||||||||||||||||||||    
T  5440965 aactatgaagcacggacactcctcgaattag 5440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 753 - 791
Target Start/End: Complemental strand, 13807275 - 13807237
Alignment:
Q  753 aactatgaagcacggacactcctcgaattagccatgtcc 791  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  13807275 aactatgaaacacggacactcctcgaattaggcatgtcc 13807237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 755 - 808
Target Start/End: Original strand, 48547938 - 48547991
Alignment:
Q  755 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacacc 808  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||| |||||    
T  48547938 ctatgaagcacggacactcctcgaattaggcgtatccgacaccgacacgacacc 48547991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 755 - 816
Target Start/End: Complemental strand, 21278 - 21217
Alignment:
Q  755 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 816  Q
    |||||||||||||| |||||||| ||||| | |||| ||||||||||| | |||||||||||    
T  21278 ctatgaagcacggatactcctcggattaggcgtgtctgacaccgacacgataccgacacata 21217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 755 - 816
Target Start/End: Complemental strand, 21149 - 21088
Alignment:
Q  755 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 816  Q
    |||||||||||||| ||| |||| ||||| | |||| ||||||||||| | |||||||||||    
T  21149 ctatgaagcacggatacttctcggattaggcgtgtctgacaccgacacgataccgacacata 21088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 755 - 816
Target Start/End: Complemental strand, 21407 - 21346
Alignment:
Q  755 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 816  Q
    ||||||||||| |||||| |||| ||||| | |||| ||||||||||| | |||||||||||    
T  21407 ctatgaagcacagacacttctcggattaggcgtgtctgacaccgacacgataccgacacata 21346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 755 - 802
Target Start/End: Original strand, 426478 - 426525
Alignment:
Q  755 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 802  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgtccgacaccgacac 426525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 755 - 802
Target Start/End: Original strand, 5732474 - 5732521
Alignment:
Q  755 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 802  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  5732474 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 5732521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 753 - 783
Target Start/End: Original strand, 34073276 - 34073306
Alignment:
Q  753 aactatgaagcacggacactcctcgaattag 783  Q
    |||||||||||||||||||||||||||||||    
T  34073276 aactatgaagcacggacactcctcgaattag 34073306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 755 - 796
Target Start/End: Complemental strand, 2117175 - 2117134
Alignment:
Q  755 ctatgaagcacggacactcctcgaattagccatgtccgacac 796  Q
    ||||||||||||||||||||||  ||||| ||||||||||||    
T  2117175 ctatgaagcacggacactcctccgattaggcatgtccgacac 2117134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 755 - 802
Target Start/End: Original strand, 19536361 - 19536408
Alignment:
Q  755 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 802  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  19536361 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 19536408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 755 - 802
Target Start/End: Complemental strand, 19574078 - 19574031
Alignment:
Q  755 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 802  Q
    |||||||||| ||||||||||||||||||   ||||||||||||||||    
T  19574078 ctatgaagcatggacactcctcgaattaggtgtgtccgacaccgacac 19574031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 756 - 802
Target Start/End: Original strand, 18255945 - 18255991
Alignment:
Q  756 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 802  Q
    |||||||||||||||||||| | ||||| | ||||||||||||||||    
T  18255945 tatgaagcacggacactccttggattaggcgtgtccgacaccgacac 18255991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 756 - 802
Target Start/End: Original strand, 34691770 - 34691816
Alignment:
Q  756 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 802  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34691770 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34691816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 756 - 802
Target Start/End: Original strand, 34714182 - 34714228
Alignment:
Q  756 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 802  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34714182 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34714228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 754 - 783
Target Start/End: Complemental strand, 17852120 - 17852091
Alignment:
Q  754 actatgaagcacggacactcctcgaattag 783  Q
    ||||||||||||||||||||||||||||||    
T  17852120 actatgaagcacggacactcctcgaattag 17852091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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