View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4954_high_2 (Length: 467)
Name: NF4954_high_2
Description: NF4954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4954_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 209 - 376
Target Start/End: Original strand, 42014726 - 42014893
Alignment:
| Q |
209 |
atgtggggtgatgaatcatgaatgaatgaatggaagaatgataggtttgaagttggtgaggttttaacttattaattttaaggtgattgtatgatctgtt |
308 |
Q |
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| T |
42014726 |
atgtggggtgatgaatcatgaatgaatgaatggaagaatgataggtttgaagttggtgaggttttaacttattaattttaaggtgattgtatgatctgtt |
42014825 |
T |
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| Q |
309 |
tagtgtttaattgaatgtattgtgaaaatgtgctaattgttttgtgattttttgggtgtttatggtga |
376 |
Q |
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| T |
42014826 |
tagtgtttaattgaatatattgtgaaaatgtgctaattgttttgtgattttttgggtgtttatggtga |
42014893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 42014546 - 42014601
Alignment:
| Q |
29 |
gctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaag |
84 |
Q |
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| T |
42014546 |
gctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaag |
42014601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 42015386 - 42015463
Alignment:
| Q |
284 |
ttttaaggtgattgtatgatctgtttagtgtttaattgaatgtattgtgaaaatgtgctaatt-gttttgtgattttt |
360 |
Q |
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| T |
42015386 |
ttttaagttaattgtatgatctgtttagtgcttaattgaatgtgttgtgaaaatgtgctaattcattttgtgattttt |
42015463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 42015210 - 42015259
Alignment:
| Q |
298 |
tatgatctgtttagtgtttaattgaatgtattgtgaaaatgtgctaattg |
347 |
Q |
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| T |
42015210 |
tatgatttgttaagtgcttaattgaatgtgttgtgaaaatgtgttaattg |
42015259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 42015642 - 42015675
Alignment:
| Q |
314 |
tttaattgaatgtattgtgaaaatgtgctaattg |
347 |
Q |
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| T |
42015642 |
tttaattgaatgtgttgtgaaaatgtgctaattg |
42015675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 209 - 376
Target Start/End: Original strand, 1247954 - 1248121
Alignment:
| Q |
209 |
atgtggggtgatgaatcatgaatgaatgaatggaagaatgataggtttgaagttggtgaggttttaacttattaattttaaggtgattgtatgatctgtt |
308 |
Q |
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| T |
1247954 |
atgtggggtgatgaatcatgaatgaatgaatggaagaatgataggtttgaagttggtgaggttttaacttattaattttaaggtgattgtatgatctgtt |
1248053 |
T |
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| Q |
309 |
tagtgtttaattgaatgtattgtgaaaatgtgctaattgttttgtgattttttgggtgtttatggtga |
376 |
Q |
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| T |
1248054 |
tattgtttaattgaatgtattgtgaaaatgtgctaattgttttgtgattttttgggtgtttatggtga |
1248121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 1247774 - 1247829
Alignment:
| Q |
29 |
gctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaag |
84 |
Q |
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| T |
1247774 |
gctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaag |
1247829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 1248616 - 1248681
Alignment:
| Q |
296 |
tgtatgatctgtttagtgtttaattgaatgtattgtgaaaatgtgctaatt-gttttgtgattttt |
360 |
Q |
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| T |
1248616 |
tgtatgatctgtttagtgcttaattgaatgtattgtgaaaatgtgctaattcattttgtgattttt |
1248681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 1248428 - 1248486
Alignment:
| Q |
298 |
tatgatctgtttagtgtttaattgaatgtattgtgaaaatgtgctaattg-ttttgtga |
355 |
Q |
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| T |
1248428 |
tatgatttgttaagtgcttaattgaatgtgttgtgaaaatgtgttaattgattttgtga |
1248486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 1248862 - 1248895
Alignment:
| Q |
314 |
tttaattgaatgtattgtgaaaatgtgctaattg |
347 |
Q |
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| T |
1248862 |
tttaattgaatgtgttgtgaaaatgtgctaattg |
1248895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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