View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4954_high_3 (Length: 348)

Name: NF4954_high_3
Description: NF4954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4954_high_3
NF4954_high_3
[»] chr5 (1 HSPs)
chr5 (13-348)||(10320729-10321066)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 10321066 - 10320729
Alignment:
Q  13 atacttgattcaaaagaataaagatacccccatcacatatatctgtgacaaattggagtcaactgatgcttttttgtcttgattccaaagaatctatctc 112  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||| |||    
T  10321066 atacttaattcaaatgaataaagatacccccatcacatatatctgtgacaaattggagtcgtctgatgcttttttgtcttgattccatagaatctacctc 10320967  T
Q  113 aatcatatggttgctaaatatgtctataaatgtatatagtagattctaatatttctatagtatgacataa--ttcaaattaaggcatggttaggtttaag 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||| | ||||    
T  10320966 aatcatatggttgctaaatatgtctataaatgtatatagtagattctaatatttctatagtatggcataaaattcaaattaaggcatggttagatataag 10320867  T
Q  211 actcatgtccaattgtccagaaaagaaggtatttgtttgattgaacctaaactattttttatggctacatgatgggagttgtggagatctcagtgtcaca 310  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10320866 actcgtgtccaattgtccagaaaagaaggtatttgtttgattgaacctaaactattttttatggctacatgatgggagttgtggagatctcagtgtcaca 10320767  T
Q  311 tatacacatgtttacgcatatttagatcacaactttct 348  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  10320766 tatatacatgcttacgcatatttagatcacaactttct 10320729  T

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