View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4954_high_8 (Length: 333)
Name: NF4954_high_8
Description: NF4954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4954_high_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 26449300 - 26449632
Alignment:
| Q |
1 |
gagaggttatcatctgtaggaagcttgttatgcaacagtctccaaacaagcacggacttagaaggagggatagcaatgtgccaaatgactttggcccaac |
100 |
Q |
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| T |
26449300 |
gagaggttatcatctgtaggaagcttgttatgcaacagtctccaaacaagcaaggacttagaaggagggatagcaatgtgccaaatgactttggcccaac |
26449399 |
T |
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| Q |
101 |
tgatgttctgaggctgattggaagtcaggaagagatatgcgtctttaaaagctagatttccatcatgagaggctttctatattagtttatcttctttagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26449400 |
tgatgttctgaggctgattggaagtcaggaagagatatgcgtctttaaaagctaaatttccatcatgagaggctttccatattagtttatcttctttagg |
26449499 |
T |
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| Q |
201 |
gaaaataggtatagtagtcaacaatagtttctgctgcaaagcaggatatgcaggcaaagaagcttgaggaacattccaatttgaatctttgatgtaggta |
300 |
Q |
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|| ||||||||||||||||| ||||||||| |||| |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449500 |
gacaataggtatagtagtcatcaatagtttttgctccaaagcagaatatgcaaccaaaaaagcttgaggaacattccaatttgaatctttgatgtaggta |
26449599 |
T |
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| Q |
301 |
tccacattagattgcagaagatgatgtaaattc |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
26449600 |
tccacattagattgcagaagatgatgtaaattc |
26449632 |
T |
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