View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4954_low_1 (Length: 521)
Name: NF4954_low_1
Description: NF4954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4954_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 23819830 - 23819516
Alignment:
| Q |
1 |
tagcttggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcattataattctgtgatcaagtcaacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23819830 |
tagcttggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcattataattctgtgatcaagtcaaaaag |
23819731 |
T |
|
| Q |
101 |
gaaattttcagatacaatgcataaataaacataatgtatttatgtgtgtgtacaaaaagacacatacggaatctagcaagacatttgaagtcttgaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23819730 |
gaaattttcagatacaatgcataaataaacataatgtatttatgtgtgtgtacaaaaagacacatacggaatctagcaagacatttgaagtcttgaaatc |
23819631 |
T |
|
| Q |
201 |
acggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
23819630 |
acggtacatcgcttttgtttgagcaccgtgaagaaatgcaaggcctttggcagcaccaacagcaaccttcaaccggaggctccaagaaagaggttgaaaa |
23819531 |
T |
|
| Q |
301 |
tatgagccttctgtt |
315 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
23819530 |
tatgagcctcctgtt |
23819516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 23832923 - 23832613
Alignment:
| Q |
1 |
tagcttggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcattataattctgtgatcaagtcaacaag |
100 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23832923 |
tagcttggtaggtacatgacttttatcaaccagggacaagttctttgccaggccaaaatttgaaagttttgcattataattctgtgatcaagtcaacaag |
23832824 |
T |
|
| Q |
101 |
gaaattttcagatacaatgcataaataaacataatgtatttatgtgtgtgtacaaaaagacacatacggaatctagcaagacatttgaagtcttgaaatc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23832823 |
gaaattttcagatacaatacataaataaacgtaatatattcatgtgtgt--acaaaaagaca--tacggaatctagcaagacatttgaagtctggaaatc |
23832728 |
T |
|
| Q |
201 |
acggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaa |
300 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
23832727 |
gcggtacattgcttttgtttgagtactgtgaagaaatgcaaggcctttggcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaa |
23832628 |
T |
|
| Q |
301 |
tatgagccttctgtt |
315 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
23832627 |
tatgagcctcctgtt |
23832613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 23829086 - 23828766
Alignment:
| Q |
1 |
tagcttggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaattagaaagttttgcattataattctgtgatcaagtcaacaag |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| | |||||| | |||||||||||||||||||||||||||||||| |||||| || |||| |
|
|
| T |
23829086 |
tagcttggtggagacatgacttttatcaaccatggacccgccctttgaatgcccaaaattagaaagttttgcattataattctgcgatcaaaccagcaag |
23828987 |
T |
|
| Q |
101 |
gaaattttcagatacaatgcataaataaacataatgtatttatgtgt------gtgtacaaaaagacacatacggaatctagcaagacatttgaagtctt |
194 |
Q |
| |
|
|||||||||||||| || |||||||||| ||||| |||| |||||| ||||| |||| ||||||||| |||||||||||||||||||| || || |
|
|
| T |
23828986 |
gaaattttcagatatgatacataaataaatataatatattaatgtgtttttgtgtgtagaaaaggacacatactgaatctagcaagacatttgaggtatt |
23828887 |
T |
|
| Q |
195 |
gaaatcacggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggt |
294 |
Q |
| |
|
|||||| ||||| | ||||||||| ||| || ||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
23828886 |
gaaatcgcggtattttccttttgtttcagcgttgcgaagaaatgtaaggcctttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggt |
23828787 |
T |
|
| Q |
295 |
tgaaaatatgagccttctgtt |
315 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
23828786 |
tgaaaatatgagcctcctgtt |
23828766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 41 - 309
Target Start/End: Complemental strand, 23825108 - 23824842
Alignment:
| Q |
41 |
tcctttgccaggccaaaattagaaagttttgcattataattctgtgatcaagtcaacaaggaaattttcagatacaatgcataaataaacataatgtatt |
140 |
Q |
| |
|
||||||||||| ||||||||| | ||||| ||||||||||||||| ||||| ||| | ||||| ||||| | | | | |||||||||||||| || | |
|
|
| T |
23825108 |
tcctttgccagcccaaaattaaagagtttcgcattataattctgtcatcaaatcagc--ggaaactttcaaacatgttacttaaataaacataatttact |
23825011 |
T |
|
| Q |
141 |
tatgtgtgtgtacaaaaagacacatacggaatctagcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcactgtgaagaaatgca |
240 |
Q |
| |
|
||||| |||||||| ||||||||| ||||| ||||||| |||||||||||| |||| |||| |||| |||||||| ||||||||||| |||||| |
|
|
| T |
23825010 |
catgtggctgtacaaatggacacataccgaatccagcaagatatttgaagtcttcaaattttggtaaatcgattttgtttcggcactgtgaaggaatgca |
23824911 |
T |
|
| Q |
241 |
aggcctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagcct |
309 |
Q |
| |
|
|| | |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
23824910 |
agacatttggcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcct |
23824842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 504
Target Start/End: Complemental strand, 23828679 - 23828574
Alignment:
| Q |
399 |
aacaagtgattctccaagcttccattggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggat |
498 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||| ||||| | ||||| | || ||||| |||||| |||||||| |||||| |||||| |||||||| |
|
|
| T |
23828679 |
aacaagtgattctccaagctgccacgtggcataaattcataaatcagaaggctgttttcatcttcaagacaataaccaatcaatttcactagatgaggat |
23828580 |
T |
|
| Q |
499 |
gagaaa |
504 |
Q |
| |
|
| |||| |
|
|
| T |
23828579 |
gtgaaa |
23828574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 499
Target Start/End: Complemental strand, 23824751 - 23824651
Alignment:
| Q |
399 |
aacaagtgattctccaagcttccattggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggat |
498 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||| |||||||| | ||| | | ||||| |||||| |||||||| |||||| |||||| |||||||| |
|
|
| T |
23824751 |
aacaagtgattctccaagctgccacgtggcataaattcatagaccaaaaggctattttcatcttcaagacaataaccaatcaatttcactagatgaggat |
23824652 |
T |
|
| Q |
499 |
g |
499 |
Q |
| |
|
| |
|
|
| T |
23824651 |
g |
23824651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 504
Target Start/End: Complemental strand, 23832522 - 23832417
Alignment:
| Q |
399 |
aacaagtgattctccaagcttccattggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggat |
498 |
Q |
| |
|
|||||||||||||||||| | ||| | ||| || ||| |||| ||||||| || |||| ||||||||||||||| |||||| | | || |||||||| |
|
|
| T |
23832522 |
aacaagtgattctccaagttgccacgaggcatgaattcaaagacaagaagactgttgtcatcttcaaggcaataaccaatcaatttgattagatgaggat |
23832423 |
T |
|
| Q |
499 |
gagaaa |
504 |
Q |
| |
|
|||||| |
|
|
| T |
23832422 |
gagaaa |
23832417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 224 - 506
Target Start/End: Complemental strand, 41448814 - 41448529
Alignment:
| Q |
224 |
cactgtgaagaaatgcaaggcctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtttctataac |
323 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41448814 |
cactgtgctgaaacgcaagccctttggcagcaccaagagcaaccttcagacagaggctccgagagagaggttgaaaatatgagccttctgtttctataac |
41448715 |
T |
|
| Q |
324 |
attgccaatgttaaacaaacttct---gaaattaaaaactaagggaaaagatggaaggtgaagaataactaacttctaaacaagtgattctccaagcttc |
420 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41448714 |
attgccaatgttaaacaaacttcttctgaaattaaaaactaagggaaaagatgggaaatgaagaataactaacttctaaacaagtgattctccaagcttc |
41448615 |
T |
|
| Q |
421 |
cattggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaac |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41448614 |
cattggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaac |
41448529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 162 - 506
Target Start/End: Complemental strand, 41459222 - 41458868
Alignment:
| Q |
162 |
acatacggaatctagcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaaga |
261 |
Q |
| |
|
|||||| ||||| | |||||||||||||||||| ||||| | || ||| |||| ||| ||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
41459222 |
acatacagaatccaacaagacatttgaagtcttaaaatctctatatatcactttattttcagcactgtgcagaaatgcaagccctttggcagcgtcaaga |
41459123 |
T |
|
| Q |
262 |
gcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtttcta-------taacattgccaatgttaaacaaacttct---gaaa |
351 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||| |||||||| ||| ||||||| | ||| ||||| |||||||||||||||||| ||| |
|
|
| T |
41459122 |
gcaaccttcagacggaggctccatgaaagaggttggaaatatgatcctcctgtttcaaatttcaataatattgctaatgttaaacaaacttcttccgaag |
41459023 |
T |
|
| Q |
352 |
ttaaaaactaagggaaaagatggaaggtgaagaataactaacttctaaacaagtgattctccaagcttccattggccataaactcatagactagaagacg |
451 |
Q |
| |
|
|||||| |||||||||||||||| | ||| ||||||| ||| || |||||||||||||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
41459022 |
ttaaaagctaagggaaaagatgggaaaggaataataactcactcctgaacaagtgattctccaagcttccacgaggcataaactcatagacgagaagacg |
41458923 |
T |
|
| Q |
452 |
gtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaac |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41458922 |
gtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaac |
41458868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 162 - 508
Target Start/End: Complemental strand, 41442440 - 41442094
Alignment:
| Q |
162 |
acatacggaatctagcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaaga |
261 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||| ||||| | || ||| |||| ||| | ||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
41442440 |
acatacggaatccaacaagatatttgaagtcttaaaatctctatatatcactttattttcatcactgtgcagaaatgcaagccctttggcagcgtcaaga |
41442341 |
T |
|
| Q |
262 |
gcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtttcta-------taacattgccaatgttaaacaaacttct---gaaa |
351 |
Q |
| |
|
||||||||||||| |||||||| || ||||||||||||||||| ||| ||||||| | | | ||||| ||||||||||||||| || ||| |
|
|
| T |
41442340 |
gcaaccttcagacgaaggctccatgaaagaggttgaaaatatgatcctcctgtttcaaatttcaatgatattgctaatgttaaacaaactccttccgaag |
41442241 |
T |
|
| Q |
352 |
ttaaaaactaagggaaaagatggaaggtgaagaataactaacttctaaacaagtgattctccaagcttccattggccataaactcatagactagaagacg |
451 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||| || |||||||||||||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
41442240 |
ttaaaaactaagggaaaaga----------ataataacttactcctgaacaagtgattctccaagcttccacgaggcataaactcatagacgagaagacg |
41442151 |
T |
|
| Q |
452 |
gtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaactg |
508 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41442150 |
gtgttcatcttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaactg |
41442094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 302
Target Start/End: Complemental strand, 34150435 - 34150316
Alignment:
| Q |
183 |
atttgaagtcttgaaatcacggtacatcgcttttgtttgagcactgtgaagaaatgcaaggcctttggcagcaccaagagcaaccttcagacagaggctc |
282 |
Q |
| |
|
||||||||| || || ||||| || ||| |||||| || | | ||||||||| ||||||| || || |||||| ||||||||||||||| | || |||| |
|
|
| T |
34150435 |
atttgaagttttaaagtcacgatatatcacttttgcttcatcgctgtgaagatatgcaagacccttagcagcatcaagagcaaccttcattcggatgctc |
34150336 |
T |
|
| Q |
283 |
caagagagaggttgaaaata |
302 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
34150335 |
caagaaagtggttgaaaata |
34150316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 421
Target Start/End: Original strand, 10845211 - 10845240
Alignment:
| Q |
392 |
acttctaaacaagtgattctccaagcttcc |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10845211 |
acttctaaacaagtgattctccaagcttcc |
10845240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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