View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4955-Insertion-1 (Length: 934)
Name: NF4955-Insertion-1
Description: NF4955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4955-Insertion-1 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 889; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 889; E-Value: 0
Query Start/End: Original strand, 7 - 934
Target Start/End: Original strand, 11975194 - 11976121
Alignment:
| Q |
7 |
aggaactccaccacaatccatcaccatcttcctttgcatttccttcttcatatcgattattgaactactttgtccacgaactttccaaaacaatgacaaa |
106 |
Q |
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| T |
11975194 |
aggaactccaccacaatccatcaccatcttcctttgcatttccttcttcatatcgattattgaactactttgtccacgaactttccaaaacaatgacaaa |
11975293 |
T |
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| Q |
107 |
gattcctcttcattaagccccggaataacatgtggcttaaacgtggtaaaaacagtatttggccttgttgtttcatgtcgtaacctgtagttacttagcg |
206 |
Q |
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| T |
11975294 |
gattcctcttcattaagccccagaataacatgtggcttaaacgtggtaaaaacagtatctggccttgttgtttcatgtcgtaacctgtagttacttagcg |
11975393 |
T |
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| Q |
207 |
aaacagtaatattgttggccacaagtttactacgtgtggttatgagtattgcacttgcaccattggacgtcattaatatcttgtccaaatcagagagcat |
306 |
Q |
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| T |
11975394 |
aaacagtaatattgttggccacaagtttactacgtgtggttatgagaattgcacttgcaccattggacgtcattaatatcttgtccaaatcagagagcat |
11975493 |
T |
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| Q |
307 |
ctcgtccccaagtatctcagttttcaaattatccagcacaacaaggtttccttttccgccgtcagtgtaagtagatgacatgtcagtggtattgaggaat |
406 |
Q |
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| T |
11975494 |
ctcgtccccaagtatctcagttttcaaattatccagcacaacaaggtttccttttccgccgtcagtgtaagtagatgacatgtcagtggtattgaggaat |
11975593 |
T |
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| Q |
407 |
tccacatcataaatccaaatttgaaggccgaagtgagctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcctgcgaacc |
506 |
Q |
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| T |
11975594 |
tccacatcataaatccaaatttgaaggccgaagtgagctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcctgcgaacc |
11975693 |
T |
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| Q |
507 |
caacaatggaaaccacagaaactttcccaacggattcagctcctgtgtggagcgggataagttgatctataatttcnnnnnnnctcccaaccatagccgg |
606 |
Q |
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| T |
11975694 |
caacaatggaaaccacagaaactttcccaacggattcagctcctgtgtggagcgggataagttgatctataatttctttttttctcccaactatagccgg |
11975793 |
T |
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| Q |
607 |
ttccaactccgtctcctcccccgtcttctcccatgcttcttgaggcggcatagttgcagtggtggtcgtggacaattcttttaaaacatctttgagatct |
706 |
Q |
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| T |
11975794 |
ttccaactccgtctcctcccccgtcttctcccatgcttcttgaggcggcatagttgcagtggtggtcgtggacaattcttttaaaacatctttgagatct |
11975893 |
T |
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| Q |
707 |
tttatggcattttgaattcttgagttgatggctttaagctgatgcttatgacgatcggcttgaaacggagagaaagttcttttctgaggcttaagaatac |
806 |
Q |
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| T |
11975894 |
tttatggcattttgaattcttgagttgatggctttaagctgatgcttatgacgatcggcttgaaacggagagaaagttcttttctgaggcttaagaatac |
11975993 |
T |
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| Q |
807 |
cggcatcgagttcctccaccaatttgttcagatctttgagggcagttttaaggttggacagaacctcatgacgttggacgtggttcttaaccaggtcttg |
906 |
Q |
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| T |
11975994 |
cggcatcgagttcctccaccaatttgttcagatctttgagggcagttttaaggttggacagaacctcatgacgttggacgtggttcttaaccaggtcttg |
11976093 |
T |
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| Q |
907 |
gattttttcargagaagttataagttgg |
934 |
Q |
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| T |
11976094 |
gattttttcaagagaagttataagttgg |
11976121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 443 - 498
Target Start/End: Complemental strand, 11730896 - 11730841
Alignment:
| Q |
443 |
gctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcc |
498 |
Q |
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| T |
11730896 |
gctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcc |
11730841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 443 - 500
Target Start/End: Complemental strand, 11730452 - 11730395
Alignment:
| Q |
443 |
gctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcctg |
500 |
Q |
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||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||| |
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| T |
11730452 |
gctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctg |
11730395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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