View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4955-Insertion-2 (Length: 890)

Name: NF4955-Insertion-2
Description: NF4955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4955-Insertion-2
NF4955-Insertion-2
[»] chr7 (8 HSPs)
chr7 (124-556)||(24690718-24691149)
chr7 (6-63)||(24691214-24691271)
chr7 (245-279)||(3811388-3811422)
chr7 (245-279)||(3817530-3817564)
chr7 (391-424)||(20238857-20238890)
chr7 (245-278)||(20238858-20238891)
chr7 (245-278)||(28421178-28421211)
chr7 (391-424)||(28421179-28421212)
[»] chr8 (20 HSPs)
chr8 (705-883)||(11072084-11072262)
chr8 (705-882)||(45093849-45094020)
chr8 (581-630)||(24471860-24471909)
chr8 (582-630)||(5769490-5769538)
chr8 (582-638)||(11071961-11072017)
chr8 (384-424)||(39727521-39727561)
chr8 (390-424)||(1171252-1171286)
chr8 (390-424)||(42033707-42033741)
chr8 (245-278)||(5542379-5542412)
chr8 (391-424)||(5542380-5542413)
chr8 (391-424)||(10699936-10699969)
chr8 (245-278)||(10699937-10699970)
chr8 (391-424)||(32890795-32890828)
chr8 (245-278)||(32890796-32890829)
chr8 (391-424)||(32896919-32896952)
chr8 (245-278)||(32896920-32896953)
chr8 (391-424)||(36818878-36818911)
chr8 (245-278)||(36818879-36818912)
chr8 (245-278)||(42993222-42993255)
chr8 (391-424)||(42993223-42993256)
[»] chr3 (22 HSPs)
chr3 (705-882)||(37252436-37252613)
chr3 (580-637)||(37252311-37252368)
chr3 (582-630)||(25437274-25437322)
chr3 (390-424)||(53069278-53069312)
chr3 (391-424)||(8331693-8331726)
chr3 (245-278)||(8331694-8331727)
chr3 (245-278)||(10238431-10238464)
chr3 (391-424)||(10238432-10238465)
chr3 (245-278)||(10244553-10244586)
chr3 (391-424)||(10244554-10244587)
chr3 (245-278)||(10769188-10769221)
chr3 (391-424)||(10769189-10769222)
chr3 (245-278)||(11839944-11839977)
chr3 (391-424)||(11839945-11839978)
chr3 (391-424)||(13837580-13837613)
chr3 (245-278)||(13837581-13837614)
chr3 (245-278)||(17056012-17056045)
chr3 (391-424)||(17056013-17056046)
chr3 (245-278)||(38449282-38449315)
chr3 (391-424)||(38449283-38449316)
chr3 (245-278)||(38455769-38455802)
chr3 (391-424)||(38455770-38455803)
[»] chr2 (11 HSPs)
chr2 (580-638)||(24125389-24125447)
chr2 (388-424)||(35084896-35084932)
chr2 (388-424)||(35090869-35090905)
chr2 (505-559)||(13149995-13150049)
chr2 (390-424)||(35438924-35438958)
chr2 (245-278)||(13149903-13149936)
chr2 (391-424)||(13149904-13149937)
chr2 (391-424)||(36750321-36750354)
chr2 (245-278)||(36750322-36750355)
chr2 (245-278)||(44717024-44717057)
chr2 (391-424)||(44717025-44717058)
[»] chr4 (12 HSPs)
chr4 (581-630)||(8371079-8371128)
chr4 (147-184)||(31986753-31986790)
chr4 (581-630)||(43041588-43041637)
chr4 (387-422)||(49976493-49976528)
chr4 (245-278)||(6257424-6257457)
chr4 (391-424)||(6257425-6257458)
chr4 (245-278)||(10739558-10739591)
chr4 (391-461)||(10739559-10739625)
chr4 (245-278)||(10953327-10953360)
chr4 (391-461)||(10953328-10953394)
chr4 (391-424)||(24287893-24287926)
chr4 (245-278)||(24287894-24287927)
[»] scaffold1234 (1 HSPs)
scaffold1234 (581-630)||(1035-1084)
[»] chr5 (8 HSPs)
chr5 (387-424)||(14610075-14610112)
chr5 (245-278)||(12686398-12686431)
chr5 (391-424)||(12686399-12686432)
chr5 (245-278)||(12692500-12692533)
chr5 (391-424)||(12692501-12692534)
chr5 (387-424)||(30772188-30772225)
chr5 (391-424)||(41297189-41297222)
chr5 (245-278)||(41297190-41297223)
[»] chr1 (14 HSPs)
chr1 (245-278)||(31051452-31051485)
chr1 (390-424)||(8093065-8093099)
chr1 (581-630)||(4325453-4325502)
chr1 (245-278)||(25381754-25381787)
chr1 (391-424)||(25381755-25381788)
chr1 (245-278)||(25387723-25387756)
chr1 (391-424)||(25387724-25387757)
chr1 (245-278)||(31057952-31057985)
chr1 (391-424)||(34739892-34739925)
chr1 (245-278)||(34739893-34739926)
chr1 (246-279)||(44409907-44409940)
chr1 (390-423)||(44409908-44409941)
chr1 (391-424)||(50306096-50306129)
chr1 (245-278)||(50306097-50306130)
[»] scaffold1114 (1 HSPs)
scaffold1114 (386-424)||(990-1028)
[»] scaffold0012 (1 HSPs)
scaffold0012 (245-279)||(173109-173143)
[»] chr6 (12 HSPs)
chr6 (390-424)||(21197249-21197283)
chr6 (388-422)||(31756437-31756471)
chr6 (245-278)||(4580540-4580573)
chr6 (391-424)||(4580541-4580574)
chr6 (245-278)||(8651022-8651055)
chr6 (391-424)||(8651023-8651056)
chr6 (245-278)||(21191085-21191118)
chr6 (391-424)||(21191086-21191119)
chr6 (391-424)||(25343531-25343564)
chr6 (245-278)||(25343532-25343565)
chr6 (391-424)||(25354118-25354151)
chr6 (245-278)||(25354119-25354152)
[»] scaffold0208 (4 HSPs)
scaffold0208 (391-424)||(6429-6462)
scaffold0208 (245-278)||(6430-6463)
scaffold0208 (391-424)||(12302-12335)
scaffold0208 (245-278)||(12303-12336)


Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 124 - 556
Target Start/End: Complemental strand, 24691149 - 24690718
Alignment:
Q  124 cattgaacatggacaacatcatcgatttaccaaggataacaataattaggtattaggaatacctaaagctttgtggcagccctccaacaataactataaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24691149 cattgaacatggacaacatcatcgatttaccaaggataacaataattaggtattaggaatacctgaagctttgtggcagccctccaacaataactataaa 24691050  T
Q  224 cagagggagaaggtgatttgcagttagcggcggctgatttggttcttccttaaccactatttttatccaaacaacaaggttgactgcatctgatttggtt 323  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| |||||||||||    
T  24691049 cagagggagaaggtgatttgcggttagcggcggctgatttggttattccttaaccactacgtttatccaaacaacaaggttgactgcagctgatttggtt 24690950  T
Q  324 cttcttcaaccgctacctttatccatttaatctcttcagatgggggaggtgatctg-aacaagcaagggttagcggcggctgatttggttcctcctcaac 422  Q
    |||||||||| |||||||||||||| |||||||| ||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  24690949 cttcttcaacagctacctttatccacttaatctcctcaaatgggaggggtgatctgaaacaagcaagggttagcggcggctgatttggttcttcctcaac 24690850  T
Q  423 cgcccgctacctctatgtctttaattctcttcagatgggaagtatcctataatta--ttgggagaagaaaaaagcagttttgttgtgtacggtctactgg 520  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||  |||||||    |||| | |||||||||||||||| |||||||     
T  24690849 cgcccgctacctctatgtctttaattctcttcagatggaaagtatcctttaattatgttgggag----aaaatgaagttttgttgtgtacgatctactgc 24690754  T
Q  521 agatcataacctcttttatattagatgatcgttagg 556  Q
    ||||||||| ||||||||||||||||||||||||||    
T  24690753 agatcataaactcttttatattagatgatcgttagg 24690718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 24691271 - 24691214
Alignment:
Q  6 caatctcaatagatcaaacattaataccccgctcagataccgctcgttggaaatttag 63  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  24691271 caatctcaatagatcaaacattaatacctcgctcagataccactcgttggaaatttag 24691214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 3811388 - 3811422
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacca 279  Q
    ||||||||||||||||||||||||||||| |||||    
T  3811388 agttagcggcggctgatttggttcttcctcaacca 3811422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 3817530 - 3817564
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacca 279  Q
    ||||||||||||||||||||||||||||| |||||    
T  3817530 agttagcggcggctgatttggttcttcctcaacca 3817564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 20238890 - 20238857
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  20238890 gttagcggcggctgatttggttcttcctcaaccg 20238857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 20238891 - 20238858
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  20238891 agttagcggcggctgatttggttcttcctcaacc 20238858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 28421178 - 28421211
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  28421178 agttagcggcggctgatttggttcttcctcaacc 28421211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 28421179 - 28421212
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  28421179 gttagcggcggctgatttggttcttcctcaaccg 28421212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 8e-82; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 705 - 883
Target Start/End: Original strand, 11072084 - 11072262
Alignment:
Q  705 ggagttcatgttagtacattgcgaaacatatatgaataagaattggttaaaataagaagagattatacattttgcatgcttttctagtgctttctatgaa 804  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11072084 ggagttcatgttagtacattgcgaaaaatatatgaataagaattggttaaaaaaagaagagattatacattttgcatgcttttctagtgctttctatgaa 11072183  T
Q  805 gcacatacttctcatattggtgtgtcctaacgtcagatttgtatcatgtccaataccaacacaacatcaacgcttaaat 883  Q
    ||||||| |||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11072184 gcacatatttctcatattggcgtgtcccaacgtcagatgtgtatcatgtccaataccaacacaacatcaacgcttaaat 11072262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 705 - 882
Target Start/End: Complemental strand, 45094020 - 45093849
Alignment:
Q  705 ggagttcatgttagtacattgcgaaacatatatgaataagaattggttaaaataagaagagattatacattttgcatgcttttctagtgctttctatgaa 804  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  45094020 ggagttcatgttagtacattgcgaaaaatatatgaataagaattggttaaaaaatgaagagattatacattttgcatgcttttctagtgctttctatgaa 45093921  T
Q  805 gcacatacttctcatattggtgtgtcctaacgtcagatttgtatcatgtccaataccaacacaacatcaacgcttaaa 882  Q
    ||||||||||||||||||||||||||| |||||||      |||||||||||||||||||||||||||||||||||||    
T  45093920 gcacatacttctcatattggtgtgtcccaacgtca------tatcatgtccaataccaacacaacatcaacgcttaaa 45093849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 24471909 - 24471860
Alignment:
Q  581 aactagaccttgcacccatgctgccgcacaggtcgtattgacggcaaata 630  Q
    ||||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  24471909 aactagaccttgcacccgtgctgccgcacgggtcatattgacggcaaata 24471860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 630
Target Start/End: Original strand, 5769490 - 5769538
Alignment:
Q  582 actagaccttgcacccatgctgccgcacaggtcgtattgacggcaaata 630  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  5769490 actagaccttgcacccgtgctgccgcacgggtcatattgacggcaaata 5769538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 638
Target Start/End: Original strand, 11071961 - 11072017
Alignment:
Q  582 actagaccttgcacccatgctgccgcacaggtcgtattgacggcaaatagaatattc 638  Q
    |||||||||||||||| ||||||||||| |||| ||||||| || ||||||||||||    
T  11071961 actagaccttgcacccgtgctgccgcacgggtcatattgacagccaatagaatattc 11072017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 384 - 424
Target Start/End: Original strand, 39727521 - 39727561
Alignment:
Q  384 agcaagggttagcggcggctgatttggttcctcctcaaccg 424  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  39727521 agcaagggttagcggctgctgatttggttcttcctcaaccg 39727561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 390 - 424
Target Start/End: Complemental strand, 1171286 - 1171252
Alignment:
Q  390 ggttagcggcggctgatttggttcctcctcaaccg 424  Q
    |||||||||||||||||||||||| ||||||||||    
T  1171286 ggttagcggcggctgatttggttcttcctcaaccg 1171252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 390 - 424
Target Start/End: Complemental strand, 42033741 - 42033707
Alignment:
Q  390 ggttagcggcggctgatttggttcctcctcaaccg 424  Q
    |||||||||||||||||||||||| ||||||||||    
T  42033741 ggttagcggcggctgatttggttcttcctcaaccg 42033707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 5542379 - 5542412
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  5542379 agttagcggcggctgatttggttcttcctcaacc 5542412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 5542380 - 5542413
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  5542380 gttagcggcggctgatttggttcttcctcaaccg 5542413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 10699969 - 10699936
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  10699969 gttagcggcggctgatttggttcttcctcaaccg 10699936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 10699970 - 10699937
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  10699970 agttagcggcggctgatttggttcttcctcaacc 10699937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 32890828 - 32890795
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  32890828 gttagcggcggctgatttggttcttcctcaaccg 32890795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 32890829 - 32890796
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  32890829 agttagcggcggctgatttggttcttcctcaacc 32890796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 32896952 - 32896919
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  32896952 gttagcggcggctgatttggttcttcctcaaccg 32896919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 32896953 - 32896920
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  32896953 agttagcggcggctgatttggttcttcctcaacc 32896920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 36818911 - 36818878
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  36818911 gttagcggcggctgatttggttcttcctcaaccg 36818878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 36818912 - 36818879
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  36818912 agttagcggcggctgatttggttcttcctcaacc 36818879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 42993222 - 42993255
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  42993222 agttagcggcggctgatttggttcttcctcaacc 42993255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 42993223 - 42993256
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  42993223 gttagcggcggctgatttggttcttcctcaaccg 42993256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 2e-76; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 705 - 882
Target Start/End: Original strand, 37252436 - 37252613
Alignment:
Q  705 ggagttcatgttagtacattgcgaaacatatatgaataagaattggttaaaataagaagagattatacattttgcatgcttttctagtgctttctatgaa 804  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  37252436 ggagttcatgttagtacattgcgaaaaatatatgaataagaattggttaaaaaaagaagagattatacatattgcatgtttttctagtgctttttatgaa 37252535  T
Q  805 gcacatacttctcatattggtgtgtcctaacgtcagatttgtatcatgtccaataccaacacaacatcaacgcttaaa 882  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  37252536 gcacatacttctcatattggtgtgtcccaacgtcagatatgtatcatgtctaataccaacacaacatcaacgcttaaa 37252613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 580 - 637
Target Start/End: Original strand, 37252311 - 37252368
Alignment:
Q  580 taactagaccttgcacccatgctgccgcacaggtcgtattgacggcaaatagaatatt 637  Q
    |||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||    
T  37252311 taactagaccttgcacccgtgctgctgcacgggtcatattgacggcaaatagaatatt 37252368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 630
Target Start/End: Complemental strand, 25437322 - 25437274
Alignment:
Q  582 actagaccttgcacccatgctgccgcacaggtcgtattgacggcaaata 630  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  25437322 actagaccttgcacccgtgctgccgcacgggtcatattgacggcaaata 25437274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 390 - 424
Target Start/End: Original strand, 53069278 - 53069312
Alignment:
Q  390 ggttagcggcggctgatttggttcctcctcaaccg 424  Q
    |||||||||||||||||||||||| ||||||||||    
T  53069278 ggttagcggcggctgatttggttcttcctcaaccg 53069312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 8331726 - 8331693
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  8331726 gttagcggcggctgatttggttcttcctcaaccg 8331693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 8331727 - 8331694
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  8331727 agttagcggcggctgatttggttcttcctcaacc 8331694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 10238431 - 10238464
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  10238431 agttagcggcggctgatttggttcttcctcaacc 10238464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 10238432 - 10238465
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  10238432 gttagcggcggctgatttggttcttcctcaaccg 10238465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 10244553 - 10244586
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  10244553 agttagcggcggctgatttggttcttcctcaacc 10244586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 10244554 - 10244587
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  10244554 gttagcggcggctgatttggttcttcctcaaccg 10244587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 10769188 - 10769221
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  10769188 agttagcggcggctgatttggttcttcctcaacc 10769221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 10769189 - 10769222
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  10769189 gttagcggcggctgatttggttcttcctcaaccg 10769222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 11839944 - 11839977
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  11839944 agttagcggcggctgatttggttcttcctcaacc 11839977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 11839945 - 11839978
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  11839945 gttagcggcggctgatttggttcttcctcaaccg 11839978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 13837613 - 13837580
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  13837613 gttagcggcggctgatttggttcttcctcaaccg 13837580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 13837614 - 13837581
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  13837614 agttagcggcggctgatttggttcttcctcaacc 13837581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 17056012 - 17056045
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  17056012 agttagcggcggctgatttggttcttcctcaacc 17056045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 17056013 - 17056046
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  17056013 gttagcggcggctgatttggttcttcctcaaccg 17056046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 38449282 - 38449315
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  38449282 agttagcggcggctgatttggttcttcctcaacc 38449315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 38449283 - 38449316
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  38449283 gttagcggcggctgatttggttcttcctcaaccg 38449316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 38455769 - 38455802
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  38455769 agttagcggcggctgatttggttcttcctcaacc 38455802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 38455770 - 38455803
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  38455770 gttagcggcggctgatttggttcttcctcaaccg 38455803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 638
Target Start/End: Complemental strand, 24125447 - 24125389
Alignment:
Q  580 taactagaccttgcacccatgctgccgcacaggtcgtattgacggcaaatagaatattc 638  Q
    |||||||||||||||||| |||||||||||  ||| ||| |||||||||||||||||||    
T  24125447 taactagaccttgcacccgtgctgccgcacgtgtcatatcgacggcaaatagaatattc 24125389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 35084896 - 35084932
Alignment:
Q  388 agggttagcggcggctgatttggttcctcctcaaccg 424  Q
    |||||||||||||||||||||||||| ||||||||||    
T  35084896 agggttagcggcggctgatttggttcttcctcaaccg 35084932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 35090869 - 35090905
Alignment:
Q  388 agggttagcggcggctgatttggttcctcctcaaccg 424  Q
    |||||||||||||||||||||||||| ||||||||||    
T  35090869 agggttagcggcggctgatttggttcttcctcaaccg 35090905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 505 - 559
Target Start/End: Original strand, 13149995 - 13150049
Alignment:
Q  505 gtgtacggtctactggagatcataacctcttttatattagatgatcgttagggtt 559  Q
    ||||||||| || ||| || |||||||||||||||||||||||| | ||||||||    
T  13149995 gtgtacggtatattggggaccataacctcttttatattagatgaccattagggtt 13150049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 390 - 424
Target Start/End: Original strand, 35438924 - 35438958
Alignment:
Q  390 ggttagcggcggctgatttggttcctcctcaaccg 424  Q
    |||||||||||||||||||||||| ||||||||||    
T  35438924 ggttagcggcggctgatttggttcttcctcaaccg 35438958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 13149903 - 13149936
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  13149903 agttagcggcggctgatttggttcttcctcaacc 13149936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 13149904 - 13149937
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  13149904 gttagcggcggctgatttggttcttcctcaaccg 13149937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 36750354 - 36750321
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  36750354 gttagcggcggctgatttggttcttcctcaaccg 36750321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 36750355 - 36750322
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  36750355 agttagcggcggctgatttggttcttcctcaacc 36750322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 44717024 - 44717057
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  44717024 agttagcggcggctgatttggttcttcctcaacc 44717057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 44717025 - 44717058
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  44717025 gttagcggcggctgatttggttcttcctcaaccg 44717058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 581 - 630
Target Start/End: Original strand, 8371079 - 8371128
Alignment:
Q  581 aactagaccttgcacccatgctgccgcacaggtcgtattgacggcaaata 630  Q
    ||||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  8371079 aactagaccttgcacccgtgctgccgcacgggtcatattgacggcaaata 8371128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 31986753 - 31986790
Alignment:
Q  147 gatttaccaaggataacaataattaggtattaggaata 184  Q
    |||||| |||||||||||||||||||||||||||||||    
T  31986753 gatttatcaaggataacaataattaggtattaggaata 31986790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 630
Target Start/End: Original strand, 43041588 - 43041637
Alignment:
Q  581 aactagaccttgcacccatgctgccgcacaggtcgtattgacggcaaata 630  Q
    |||||||||| |||||| ||||||||||| |||| |||||||||||||||    
T  43041588 aactagacctcgcacccgtgctgccgcacgggtcatattgacggcaaata 43041637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 422
Target Start/End: Complemental strand, 49976528 - 49976493
Alignment:
Q  387 aagggttagcggcggctgatttggttcctcctcaac 422  Q
    ||||||||||||||||||||||||||| ||||||||    
T  49976528 aagggttagcggcggctgatttggttcttcctcaac 49976493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 6257424 - 6257457
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  6257424 agttagcggcggctgatttggttcttcctcaacc 6257457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 6257425 - 6257458
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  6257425 gttagcggcggctgatttggttcttcctcaaccg 6257458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 10739558 - 10739591
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  10739558 agttagcggcggctgatttggttcttcctcaacc 10739591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 461
Target Start/End: Original strand, 10739559 - 10739625
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccgcccgctacctctatgtctttaattctcttcagatggg 461  Q
    ||||||||||||||||||||||| ||||||||||     ||||| |||| ||  |||||||||||||||||    
T  10739559 gttagcggcggctgatttggttcttcctcaaccga----tacctttatgcctcaaattctcttcagatggg 10739625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 10953327 - 10953360
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  10953327 agttagcggcggctgatttggttcttcctcaacc 10953360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 461
Target Start/End: Original strand, 10953328 - 10953394
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccgcccgctacctctatgtctttaattctcttcagatggg 461  Q
    ||||||||||||||||||||||| ||||||||||     ||||| |||| ||  |||||||||||||||||    
T  10953328 gttagcggcggctgatttggttcttcctcaaccga----tacctttatgcctcaaattctcttcagatggg 10953394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 24287926 - 24287893
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  24287926 gttagcggcggctgatttggttcttcctcaaccg 24287893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 24287927 - 24287894
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  24287927 agttagcggcggctgatttggttcttcctcaacc 24287894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1234 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 1084 - 1035
Alignment:
Q  581 aactagaccttgcacccatgctgccgcacaggtcgtattgacggcaaata 630  Q
    ||||||||||||||||| ||||||||||| |||| |||||||| ||||||    
T  1084 aactagaccttgcacccgtgctgccgcacgggtcatattgacgacaaata 1035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 14610112 - 14610075
Alignment:
Q  387 aagggttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  14610112 aagggttagcggcggctgatttggttcttcctcaaccg 14610075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 12686398 - 12686431
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  12686398 agttagcggcggctgatttggttcttcctcaacc 12686431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 12686399 - 12686432
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  12686399 gttagcggcggctgatttggttcttcctcaaccg 12686432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 12692500 - 12692533
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  12692500 agttagcggcggctgatttggttcttcctcaacc 12692533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 12692501 - 12692534
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  12692501 gttagcggcggctgatttggttcttcctcaaccg 12692534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 30772225 - 30772188
Alignment:
Q  387 aagggttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  30772225 aagggttagcggcggctgatttgattcttcctcaaccg 30772188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 41297222 - 41297189
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  41297222 gttagcggcggctgatttggttcttcctcaaccg 41297189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 41297223 - 41297190
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  41297223 agttagcggcggctgatttggttcttcctcaacc 41297190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 31051485 - 31051452
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||||||||    
T  31051485 agttagcggcggctgatttggttcttccttaacc 31051452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 390 - 424
Target Start/End: Original strand, 8093065 - 8093099
Alignment:
Q  390 ggttagcggcggctgatttggttcctcctcaaccg 424  Q
    |||||||||||||||||||||||| ||||||||||    
T  8093065 ggttagcggcggctgatttggttcttcctcaaccg 8093099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 630
Target Start/End: Original strand, 4325453 - 4325502
Alignment:
Q  581 aactagaccttgcacccatgctgccgcacaggtcgtattgacggcaaata 630  Q
    ||||||||||||||||| ||||||||||| |||| |||||| || |||||    
T  4325453 aactagaccttgcacccgtgctgccgcacgggtcatattgatggaaaata 4325502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 25381754 - 25381787
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  25381754 agttagcggcggctgatttggttcttcctcaacc 25381787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 25381755 - 25381788
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  25381755 gttagcggcggctgatttggttcttcctcaaccg 25381788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 25387723 - 25387756
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  25387723 agttagcggcggctgatttggttcttcctcaacc 25387756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 25387724 - 25387757
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  25387724 gttagcggcggctgatttggttcttcctcaaccg 25387757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 31057985 - 31057952
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||| ||||||||||||||||||||||    
T  31057985 agttagcggcgactgatttggttcttccttaacc 31057952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 34739925 - 34739892
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  34739925 gttagcggcggctgatttggttcttcctcaaccg 34739892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 34739926 - 34739893
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  34739926 agttagcggcggctgatttggttcttcctcaacc 34739893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 44409940 - 44409907
Alignment:
Q  246 gttagcggcggctgatttggttcttccttaacca 279  Q
    |||||||||||||||||||||||||||| |||||    
T  44409940 gttagcggcggctgatttggttcttcctcaacca 44409907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 423
Target Start/End: Complemental strand, 44409941 - 44409908
Alignment:
Q  390 ggttagcggcggctgatttggttcctcctcaacc 423  Q
    |||||||||||||||||||||||| |||||||||    
T  44409941 ggttagcggcggctgatttggttcttcctcaacc 44409908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 50306129 - 50306096
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  50306129 gttagcggcggctgatttggttcttcctcaaccg 50306096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 50306130 - 50306097
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  50306130 agttagcggcggctgatttggttcttcctcaacc 50306097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 386 - 424
Target Start/End: Complemental strand, 1028 - 990
Alignment:
Q  386 caagggttagcggcggctgatttggttcctcctcaaccg 424  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  1028 caagggttagtggcggctgatttggttcttcctcaaccg 990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 173109 - 173143
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacca 279  Q
    ||||||||||||||||||||||||||||| |||||    
T  173109 agttagcggcggctgatttggttcttcctcaacca 173143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 390 - 424
Target Start/End: Original strand, 21197249 - 21197283
Alignment:
Q  390 ggttagcggcggctgatttggttcctcctcaaccg 424  Q
    |||||||||||||||||||||||| ||||||||||    
T  21197249 ggttagcggcggctgatttggttcttcctcaaccg 21197283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 388 - 422
Target Start/End: Original strand, 31756437 - 31756471
Alignment:
Q  388 agggttagcggcggctgatttggttcctcctcaac 422  Q
    |||||||||||||||||||||||||| ||||||||    
T  31756437 agggttagcggcggctgatttggttcttcctcaac 31756471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 4580540 - 4580573
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  4580540 agttagcggcggctgatttggttcttcctcaacc 4580573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 4580541 - 4580574
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  4580541 gttagcggcggctgatttggttcttcctcaaccg 4580574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 8651022 - 8651055
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  8651022 agttagcggcggctgatttggttcttcctcaacc 8651055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 8651023 - 8651056
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  8651023 gttagcggcggctgatttggttcttcctcaaccg 8651056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 21191085 - 21191118
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  21191085 agttagcggcggctgatttggttcttcctcaacc 21191118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 21191086 - 21191119
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  21191086 gttagcggcggctgatttggttcttcctcaaccg 21191119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 25343564 - 25343531
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  25343564 gttagcggcggctgatttggttcttcctcaaccg 25343531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 25343565 - 25343532
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  25343565 agttagcggcggctgatttggttcttcctcaacc 25343532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 25354151 - 25354118
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  25354151 gttagcggcggctgatttggttcttcctcaaccg 25354118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 25354152 - 25354119
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  25354152 agttagcggcggctgatttggttcttcctcaacc 25354119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 30; Significance: 0.0000003; HSPs: 4)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 6462 - 6429
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  6462 gttagcggcggctgatttggttcttcctcaaccg 6429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 6463 - 6430
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  6463 agttagcggcggctgatttggttcttcctcaacc 6430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 12335 - 12302
Alignment:
Q  391 gttagcggcggctgatttggttcctcctcaaccg 424  Q
    ||||||||||||||||||||||| ||||||||||    
T  12335 gttagcggcggctgatttggttcttcctcaaccg 12302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 12336 - 12303
Alignment:
Q  245 agttagcggcggctgatttggttcttccttaacc 278  Q
    ||||||||||||||||||||||||||||| ||||    
T  12336 agttagcggcggctgatttggttcttcctcaacc 12303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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