View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4955-Insertion-3 (Length: 676)
Name: NF4955-Insertion-3
Description: NF4955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4955-Insertion-3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 8 - 517
Target Start/End: Complemental strand, 2914641 - 2914133
Alignment:
| Q |
8 |
agtattttattgccatccacctaaatagtattaataacttacgtacaattccatcctcatcctcataaatagaagcctattcttaccaatttattttact |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2914641 |
agtattttattgccatccacctaaataatattaataacttacgtacaattccatcctcatcctcataaatagaagcctattcttaccaatttattctact |
2914542 |
T |
|
| Q |
108 |
gccatctacatctacctaaaaaataatgcaaatccggccaagtttcagcatcatatatagtatannnnnnnnaaatgaccaatattgttagtattattga |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2914541 |
gccatctacatctacctaaaaaataatacaaatccggccaagtttcagcatcatatatagtatattttttttaaatgaccaatattgttagtattattga |
2914442 |
T |
|
| Q |
208 |
catgttaaaaataaataaaataatccagtattatagtgaagttgagatcgaagctttaacctccttatcattccttttgttaacccttacagcgatgaaa |
307 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2914441 |
catgctaaaaataaataaaataattcagtattatagtgaagttgagatccaagctttaacctccttatcattccttttgttaacccttacagtgatgaaa |
2914342 |
T |
|
| Q |
308 |
ctatatannnnnnnngttataacaagaagggccaaagcttggaaaaagagaacgaaaccgaaattaacgagggatagaaatctccattacattagcaatc |
407 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2914341 |
ctatat-ttttttttgttataacaaggagggccaaagcttggaaaatgagaacgaaaccgaaattaacgagggatagaaatctccattacattagcaatc |
2914243 |
T |
|
| Q |
408 |
aacaaatgactaaattgagacggacaatacataaaggaaacagtttcagaacccatggagcaaccataattagataactcatttgcctattgatttgctt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2914242 |
aacaaatgactaaattgagacggacaatacagaaaggaaacagtttcagaacccatggagcaaccataattagataactcatttgcctattgatttgctt |
2914143 |
T |
|
| Q |
508 |
caccgtaaga |
517 |
Q |
| |
|
|||||||||| |
|
|
| T |
2914142 |
caccgtaaga |
2914133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 515 - 644
Target Start/End: Complemental strand, 2914094 - 2913965
Alignment:
| Q |
515 |
agagaatcttgtggactatagacctagcacaaggacttcaacgctcatttgagttaagaccttctagcacaccccaaagctccaccaaataagcacgggt |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
2914094 |
agagaatcttgtggactatagacctagcacaaggacttcaacgctcatttgagttaaggccttctaccacaccccaaagctccgccaaataagcacgggt |
2913995 |
T |
|
| Q |
615 |
agcacttaggtgacacattgtagttggtga |
644 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |
|
|
| T |
2913994 |
agcacttgggtgacacattgtggttggtga |
2913965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University