View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4955-Insertion-4 (Length: 573)
Name: NF4955-Insertion-4
Description: NF4955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4955-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 53 - 571
Target Start/End: Complemental strand, 39784832 - 39784315
Alignment:
| Q |
53 |
tacttgctagcaaatgttgcatcctttgttctctccccatcttcatggcttcaaagttgggaatatatgtcccttcatcattaaggcactgtgttcactg |
152 |
Q |
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| T |
39784832 |
tacttgctagcaaatgttgcatcctttgttctctccccatcttcatggcttcaaagttgggaatatatgtcccttgatcattaaggcactgt-------- |
39784741 |
T |
|
| Q |
153 |
tagccactcaccatacctcctatgcttgcgactgaacttatagagagcctgagcatcatgagaaacctcaaatgcaacagttgatcattgccaacaaatt |
252 |
Q |
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| T |
39784740 |
-aggcactcaccatacctcctatgcttgcgactgaacttatagagagcctgagcatcatgagaaacctcaaacgcaacagctgatcattgccaacaaatt |
39784642 |
T |
|
| Q |
253 |
aagtcacccnnnnnnnnacgatttggatcttattaatatgtacctaatttctagctaattgttataaccaattggtaactgtattactataaaataacat |
352 |
Q |
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| T |
39784641 |
aagtcacccttttttttacgatttgggtcttattaatatgtacctaatttctagctaattgttataaccaattggtaactgtattactataaaataacat |
39784542 |
T |
|
| Q |
353 |
tattcggttaattaggcttaacttgtgtgtttgagcaactgatcacttatgaacttttttatatacattttttatagcataaaagtttatttgagacgga |
452 |
Q |
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| T |
39784541 |
tattcggttaattaggctttacttgtgtgtttgagcaaccgatcacttatgaacttttttatatacattttttatagcataaaagtttatttgagacgga |
39784442 |
T |
|
| Q |
453 |
ctctggaaatttactagaatggggatagacttc--------aagagtgtttataaatctacttacaaattacatcaaatttttatctacatttactctac |
544 |
Q |
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|||| |||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
39784441 |
ctctagaaatttactggaatgggaatagacttcaaaattcaaagagtgtttataaatctatttacaaatcacatcaaatttttatctacatttactctac |
39784342 |
T |
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| Q |
545 |
gtgttccattatattcttattctctct |
571 |
Q |
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| T |
39784341 |
gtgttccattatattcttattctctct |
39784315 |
T |
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