View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4955-Insertion-5 (Length: 246)
Name: NF4955-Insertion-5
Description: NF4955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4955-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 6030479 - 6030697
Alignment:
| Q |
23 |
aaaggttcctaataaatgtaacttttatggtatgaatttgtttggtgtttgtacctctaccgacttctggttataaataatttgctaaagttctctagtg |
122 |
Q |
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| T |
6030479 |
aaaggttcctaataaatgcaacttttatggtatgaatctgtttggtgtttgtacctctaccgacttctggttataaataatttgctaaagttctctagtg |
6030578 |
T |
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| Q |
123 |
tcttactgctatactatttttcaaaagtgaaggacaaagaaccagtaaattaatatgactacactggttgagactcactgtagacagcaatgaaaattgc |
222 |
Q |
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| T |
6030579 |
tcttactgcta-cttattttacaaaagtgaaggacaaagaaccagtaaattaatatgactacactggttgagactcacagtagacagcaatgaaaattgc |
6030677 |
T |
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| Q |
223 |
attactttcattgttttcct |
242 |
Q |
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|||||||||||||||||||| |
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| T |
6030678 |
attactttcattgttttcct |
6030697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 6029948 - 6030000
Alignment:
| Q |
23 |
aaaggttcctaataaatgtaacttttatggtatgaatttgtttggtgtttgta |
75 |
Q |
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|||||||||||||||||| |||||||||| ||| | |||||||| |||||||| |
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| T |
6029948 |
aaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgta |
6030000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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