View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4955_high_4 (Length: 334)
Name: NF4955_high_4
Description: NF4955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4955_high_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 24269466 - 24269808
Alignment:
| Q |
1 |
aaacatcggtcctcaagacacaaagtttttaatgtatattgtgtgtagcataatagatcgtcatatgatgcacttatattggtgnnnnnnnnn---ataa |
97 |
Q |
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| T |
24269466 |
aaacatcgatcctcaaaacaca--gtttttaatgtatattgtgtgtagcataatagatcgtcatatgatgcacatatattggtgttttttttttttataa |
24269563 |
T |
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| Q |
98 |
acaaaagagattatattaaatcaac--------gttacacagataggccaaatcctcaaggatctctcgatccatattgaattgcgcttaataaaagtgt |
189 |
Q |
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| T |
24269564 |
acaaaagagattatattaaatcaacaaatcagcgttacacagataggccaaatcctcaaggatctctcgatccatattgaattgcgcttaataaaagtgt |
24269663 |
T |
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| Q |
190 |
attggctaattcatgagctaccctattccctgatcgtaaacaaaaaagtacaactataaaaacacctcttcatcttcctaatgcttctcacaaaacaccc |
289 |
Q |
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| T |
24269664 |
attggctaattcatgagctaccctattccctgatcgtaaacaaaaaagtacaactataaaaacacctcttcatcttcctaatgcttctcacaaaactccc |
24269763 |
T |
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| Q |
290 |
tgaatgcctaagtgaaagtgaaatgttcatcttcctatgcttctc |
334 |
Q |
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| T |
24269764 |
tgaatgcctaagtgaaagtgaaatgttcatcttcctatgcttctc |
24269808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 24269789 - 24269841
Alignment:
| Q |
258 |
ttcatcttcctaatgcttctcacaaaacaccctgaatgcctaagtgaaagtgaa |
311 |
Q |
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| T |
24269789 |
ttcatcttccta-tgcttctcacaaaactcccaaaaggcctaagtgaaagtgaa |
24269841 |
T |
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