View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4955_high_6 (Length: 280)
Name: NF4955_high_6
Description: NF4955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4955_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 38291671 - 38291393
Alignment:
| Q |
1 |
ataatactccaacttataattactattactttgtatcaaaataatcattggatatatgtgattctaataaagcaatgaaaatgtagacaagtgcaggtgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38291671 |
ataatactccaacttataattactattactttgtatcaaaataatcattggatatatgtgattctaataaagcaatgaaaatgtagataagtgcaggtgg |
38291572 |
T |
|
| Q |
101 |
aacttgagaaaagttaaggttgacaccgacgttgagttctagatcattccaaattcgagtgggaagattagtagctggaagttt--aa---------ttt |
189 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
38291571 |
aacttgagaaaagttaaggttgacactgacgttgggttctagatcattccaaattcgagtgggaagattagtagctggaagttttgaagccatatttttt |
38291472 |
T |
|
| Q |
190 |
ga---agccatattgataagaaaaatctcaaaacgatccacttttataaacttcaaaatccaaaattttcaaagtagat |
265 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38291471 |
gagatgggaatattgataagaaaaatctcaaaacgatccacttttataaacttcaaaatccaaaattttcaaagtagat |
38291393 |
T |
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