View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4955_low_2 (Length: 590)
Name: NF4955_low_2
Description: NF4955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4955_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 167 - 574
Target Start/End: Complemental strand, 2752200 - 2751797
Alignment:
| Q |
167 |
atatactcgaaacctgaatgggtagctgaagagcgaagtttctgacttggaaattatgaataaataatcggtgaggaagaaactatagttgaacctaggc |
266 |
Q |
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| T |
2752200 |
atatactcgaaacctga-tgggtagctgaagagcgaagtttctgacttggaaattatgaataaataatcggtgaggaagaaactagagttgaacctaggc |
2752102 |
T |
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| Q |
267 |
tgggaaccagttcagaccatatataaggcctttttaaagcttccaaaaataattaggtaacgagggattgatgaagcaggttggctaagtcacatacatg |
366 |
Q |
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| T |
2752101 |
tgggagccagtttagaccatatacaaggcctttttaaagcttccaaaaataattaggtaacgagggat-gatgaagccagttggctaagtcacatacatg |
2752003 |
T |
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| Q |
367 |
tcctcttgattaactttgaatcaacttaaatataatgaaagcagaattaatcttggttagcagaataaaaatattcattcaaatgaggatattttgatta |
466 |
Q |
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| T |
2752002 |
tcctcttgattaactttgaatcaacttaaata--atgaaagcagaattaatcttggttagcaaaataaaaatattcattcaaatgaggatattttgatta |
2751905 |
T |
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| Q |
467 |
ttacatggacagaaacttcaaaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaaggttctacagccaaattataata |
566 |
Q |
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| T |
2751904 |
ttacatggacagaaacttcaaaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaaggttctacagccatattataata |
2751805 |
T |
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| Q |
567 |
acatacta |
574 |
Q |
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| T |
2751804 |
acatacta |
2751797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 2752315 - 2752199
Alignment:
| Q |
21 |
tctgagttaggaagagtcctgtggtgtggaagtaagtaggaatgacttcaacacacaatatgtgggttgatggaatgtgatccttcaaaaagaatgtggc |
120 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2752315 |
tctgagttaggaagagtcctgtggtgtggaagta----ggaatgacttcaacacacaatatgtgggttgatagaatgtgatccttcaaaaagaatgtggc |
2752220 |
T |
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| Q |
121 |
tgcaaatgaatttggagtgat |
141 |
Q |
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| T |
2752219 |
tgcaaatgaatttggagtgat |
2752199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 544
Target Start/End: Complemental strand, 2800491 - 2800434
Alignment:
| Q |
487 |
aaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaag |
544 |
Q |
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| T |
2800491 |
aaatgatgtctgaatggagtccaaatataggtcttgattacaaggttttgaatcaaag |
2800434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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