View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4955_low_3 (Length: 391)
Name: NF4955_low_3
Description: NF4955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4955_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37640893 - 37640661
Alignment:
| Q |
1 |
aaacacgtgataatttcataatcatattaacaaaagttgaacctcacatttcatagttaggagaattgttacgaaattgaagcattaacacatattgttt |
100 |
Q |
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| T |
37640893 |
aaacacgtgataatttcataatcatattaacaaaagttgaacctcacatttcatagttaggagaattgttacgaaattgaagcattaacacatattgctt |
37640794 |
T |
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| Q |
101 |
cacgagttccagataaagtctataagcttgtggatgaacttttctcatcggaacaatcctgaaatcattcaaaaa------------taacaataataaa |
188 |
Q |
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| T |
37640793 |
cacgagttccagataaagtctataagcttgtggataaacttttctcatcggaacaatcctgaaatcattcaaaaataataataatattaataataataaa |
37640694 |
T |
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| Q |
189 |
tttggattaaaatttacaatgcaattgaatcat |
221 |
Q |
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| T |
37640693 |
tttggattaaaatttacaatgcaattgaatcat |
37640661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 286 - 372
Target Start/End: Complemental strand, 37640596 - 37640510
Alignment:
| Q |
286 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaaggttgagtgaagtagcaatgtctaga |
372 |
Q |
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| T |
37640596 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaaggttgagtgaagcagcaatgtctaga |
37640510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 2156744 - 2156830
Alignment:
| Q |
286 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaaggttgagtgaagtagcaatgtctaga |
372 |
Q |
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| T |
2156744 |
gtaacggaaatgtggaagaacatagtggagagaagagcgatgaggagtaacggaggaagaaggttgagtgaagtagcaatgtctaga |
2156830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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