View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4955_low_8 (Length: 246)
Name: NF4955_low_8
Description: NF4955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4955_low_8 |
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| [»] scaffold0132 (2 HSPs) |
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Alignment Details
Target: scaffold0132 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 2372 - 2157
Alignment:
| Q |
19 |
gtgtggtgtttaccggctgttcttgtggtttcatctttggagcggttttttgttacagttttgtgttttcctggatatcagctgttgttcctggcagtga |
118 |
Q |
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| T |
2372 |
gtgtggtgtttaccggctgttcttgtggtttcatctttggagcggttttttgttacagttttgtgttttcctggatatcagctgttgttcctggcagtga |
2273 |
T |
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| Q |
119 |
ttaagttttaggtccccacacaactctccaggagggtcaggagctatttctggcagttttgaagttattttagcactcgtgtggggggcagtatgctttt |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2272 |
ttaagttttaggtccccacgcaactctccaggagggtcaggagctatttttggcagtgttgaagttattttagcactcgtgtggggggcagtacgctttt |
2173 |
T |
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| Q |
219 |
cgggagatggtgccta |
234 |
Q |
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|||||||||||||||| |
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| T |
2172 |
cgggagatggtgccta |
2157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 10332 - 10117
Alignment:
| Q |
19 |
gtgtggtgtttaccggctgttcttgtggtttcatctttggagcggttttttgttacagttttgtgttttcctggatatcagctgttgttcctggcagtga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10332 |
gtgtggtgtttaccggctgttcttgtggtttcatctttggagcggttttttgttacagttttgtgttttcctggatatcagctgttgttcctggcagtga |
10233 |
T |
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| Q |
119 |
ttaagttttaggtccccacacaactctccaggagggtcaggagctatttctggcagttttgaagttattttagcactcgtgtggggggcagtatgctttt |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10232 |
ttaagttttaggtccccacgcaactctccaggagggtcaggagctatttttggcagtgttgaagttattttagcactcgtgtggggggcagtacgctttt |
10133 |
T |
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| Q |
219 |
cgggagatggtgccta |
234 |
Q |
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|||||||||||||||| |
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| T |
10132 |
cgggagatggtgccta |
10117 |
T |
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