View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4956-Insertion-10 (Length: 271)
Name: NF4956-Insertion-10
Description: NF4956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4956-Insertion-10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 31882849 - 31882585
Alignment:
| Q |
7 |
agtgagaattttgattggttaactggtatttcgtgaaacattccctataannnnnnnnngcatatagcacacctctttctatagttacatgtaacttaat |
106 |
Q |
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| T |
31882849 |
agtgagaattgtgattggttaactggtatttcgtgaaacattagctataatttttttttgcatatagcacacctctttctatagttacatgtaacttaat |
31882750 |
T |
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| Q |
107 |
gaaattactaactaatgtataaagtattggatcacattgtcatcaagaatgaatatgtgagacaatgtgttggttttctagaatgtaaacatgactatga |
206 |
Q |
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| T |
31882749 |
gaaattactaactaatgtacaaagtattagaacacattgtcatcaagaatgaatatgtgagacaatgtgttggttttctaggatgtaaacatgactatga |
31882650 |
T |
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| Q |
207 |
aaactaaaacttacacaaccttgcaaacattcttcgtacgcaatgtattgatcacagatgacttc |
271 |
Q |
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| T |
31882649 |
aaactaaaacttacacaaccttgcaaacattcttcgtacgcaatgtattgatcacagatgacttc |
31882585 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 8196718 - 8196668
Alignment:
| Q |
171 |
atgtgttggttttctagaatgtaaacatgactatgaaaactaaaacttaca |
221 |
Q |
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| T |
8196718 |
atgtgttggttttctagaatgtaaacataaatgtgaagactataacttaca |
8196668 |
T |
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