View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4956-Insertion-2 (Length: 928)

Name: NF4956-Insertion-2
Description: NF4956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4956-Insertion-2
NF4956-Insertion-2
[»] chr2 (25 HSPs)
chr2 (8-741)||(9258468-9259201)
chr2 (8-635)||(9268476-9269090)
chr2 (101-519)||(9237969-9238387)
chr2 (206-519)||(9250592-9250905)
chr2 (857-917)||(6288103-6288163)
chr2 (857-917)||(3594916-3594976)
chr2 (857-917)||(13780557-13780617)
chr2 (857-917)||(41435160-41435220)
chr2 (857-917)||(42380252-42380312)
chr2 (860-917)||(40254109-40254166)
chr2 (857-917)||(3594794-3594854)
chr2 (857-917)||(23459803-23459863)
chr2 (857-917)||(29188712-29188772)
chr2 (857-917)||(41435282-41435342)
chr2 (864-917)||(8988913-8988966)
chr2 (857-917)||(375051-375111)
chr2 (857-917)||(3354737-3354797)
chr2 (857-917)||(13780435-13780495)
chr2 (862-917)||(40254228-40254283)
chr2 (763-854)||(9259220-9259301)
chr2 (857-914)||(6287979-6288036)
chr2 (865-914)||(8008746-8008795)
chr2 (872-917)||(28029883-28029928)
chr2 (859-917)||(28029766-28029824)
chr2 (857-917)||(8008622-8008683)
[»] chr6 (10 HSPs)
chr6 (855-917)||(7098150-7098212)
chr6 (856-917)||(7545696-7545757)
chr6 (857-914)||(32737705-32737762)
chr6 (857-917)||(2142250-2142310)
chr6 (857-917)||(7507864-7507924)
chr6 (857-917)||(7506791-7506851)
chr6 (866-917)||(7507758-7507809)
chr6 (857-917)||(24484937-24484997)
chr6 (862-917)||(7098274-7098329)
chr6 (883-916)||(7545597-7545630)
[»] scaffold0664 (2 HSPs)
scaffold0664 (857-917)||(4657-4717)
scaffold0664 (862-917)||(4779-4834)
[»] chr7 (21 HSPs)
chr7 (857-917)||(30102552-30102612)
chr7 (857-917)||(32520286-32520346)
chr7 (856-917)||(14696713-14696774)
chr7 (857-917)||(4269116-4269176)
chr7 (857-917)||(32520388-32520448)
chr7 (863-917)||(14696836-14696890)
chr7 (857-917)||(28528609-28528669)
chr7 (857-917)||(30102430-30102490)
chr7 (857-917)||(47799857-47799917)
chr7 (857-916)||(19027763-19027822)
chr7 (857-916)||(20726814-20726873)
chr7 (855-917)||(47080487-47080549)
chr7 (859-917)||(31236225-31236283)
chr7 (856-912)||(4269240-4269296)
chr7 (857-917)||(19027636-19027700)
chr7 (857-917)||(20726936-20727000)
chr7 (863-917)||(30588593-30588647)
chr7 (871-917)||(35737171-35737217)
chr7 (865-916)||(19888999-19889050)
chr7 (849-881)||(18803313-18803345)
chr7 (865-917)||(33057215-33057268)
[»] chr4 (25 HSPs)
chr4 (857-917)||(17492939-17492999)
chr4 (857-916)||(32146562-32146621)
chr4 (856-917)||(46238902-46238963)
chr4 (857-917)||(46239025-46239085)
chr4 (857-917)||(53526025-53526085)
chr4 (857-917)||(53526147-53526207)
chr4 (854-917)||(17493061-17493124)
chr4 (857-917)||(5524505-5524565)
chr4 (857-917)||(17317265-17317325)
chr4 (862-910)||(25218939-25218987)
chr4 (855-917)||(36688143-36688205)
chr4 (857-915)||(47834624-47834682)
chr4 (865-917)||(25219055-25219107)
chr4 (857-917)||(28405383-28405443)
chr4 (865-917)||(32146447-32146499)
chr4 (857-917)||(55160449-55160509)
chr4 (857-917)||(56269033-56269093)
chr4 (857-916)||(42010176-42010235)
chr4 (857-917)||(1015811-1015871)
chr4 (865-917)||(5361484-5361536)
chr4 (862-917)||(28405266-28405321)
chr4 (857-917)||(17317145-17317204)
chr4 (857-917)||(37002208-37002268)
chr4 (877-917)||(55160347-55160387)
chr4 (871-917)||(28701805-28701851)
[»] chr8 (10 HSPs)
chr8 (858-917)||(17867617-17867676)
chr8 (857-916)||(30905021-30905080)
chr8 (857-917)||(1937111-1937171)
chr8 (857-917)||(17867738-17867798)
chr8 (862-917)||(11090445-11090500)
chr8 (857-917)||(24241722-24241782)
chr8 (865-917)||(26749513-26749565)
chr8 (862-917)||(30904903-30904958)
chr8 (859-917)||(11090564-11090622)
chr8 (865-917)||(34612622-34612674)
[»] scaffold0238 (1 HSPs)
scaffold0238 (856-917)||(25690-25751)
[»] chr5 (10 HSPs)
chr5 (857-917)||(36290660-36290720)
chr5 (857-917)||(40162666-40162726)
chr5 (857-917)||(11960546-11960606)
chr5 (857-916)||(3041264-3041323)
chr5 (859-908)||(8675088-8675137)
chr5 (857-917)||(2984347-2984407)
chr5 (865-917)||(40162788-40162840)
chr5 (857-912)||(2883121-2883176)
chr5 (878-917)||(41660164-41660203)
chr5 (857-907)||(2883775-2883825)
[»] chr1 (9 HSPs)
chr1 (857-917)||(18107278-18107338)
chr1 (859-917)||(36004886-36004944)
chr1 (857-917)||(6948787-6948847)
chr1 (862-917)||(18107400-18107455)
chr1 (856-917)||(13615297-13615358)
chr1 (857-917)||(52279996-52280056)
chr1 (858-917)||(20507609-20507668)
chr1 (857-917)||(30077601-30077661)
chr1 (862-917)||(6948910-6948965)
[»] chr3 (10 HSPs)
chr3 (857-917)||(53642069-53642129)
chr3 (857-917)||(27959148-27959208)
chr3 (857-917)||(28792437-28792497)
chr3 (853-917)||(42613138-42613202)
chr3 (862-917)||(49679232-49679287)
chr3 (864-916)||(45799141-45799193)
chr3 (857-912)||(28792331-28792386)
chr3 (862-917)||(31523630-31523685)
chr3 (859-914)||(45799015-45799073)
chr3 (857-912)||(53642193-53642248)
[»] scaffold0712 (1 HSPs)
scaffold0712 (857-916)||(3030-3089)
[»] scaffold0709 (1 HSPs)
scaffold0709 (857-916)||(3050-3109)
[»] scaffold0171 (1 HSPs)
scaffold0171 (857-912)||(17261-17316)


Alignment Details
Target: chr2 (Bit Score: 706; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 8 - 741
Target Start/End: Original strand, 9258468 - 9259201
Alignment:
Q  8 taaacaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgcatttgcatactgtgacatat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9258468 taaacaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgcatttgcataccgtgacatat 9258567  T
Q  108 aaagagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattcagaatcattgatgtaatatgtaaggtgatcatcaataattctcga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9258568 aaagagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattcagaatcattgatgtaatatgtaaggtgatcatcaataattctcga 9258667  T
Q  208 agcatcaatcaccaattcacctctacagagcctgagaatcaaagaaacaatatattgtgtggctttccacactttaggacacgctatactcctcaagcga 307  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9258668 agcaccaatcaccaattcacctctacagagcctgagaatcaaagaaacaatatattgtgtggctttccacactttaggacacgctatactcctcaagcga 9258767  T
Q  308 ccaaccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttgaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9258768 ccaaccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttgaa 9258867  T
Q  408 tcggaattctggttttagatgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatgcg 507  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9258868 tcggaattctggttttagacgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatgcg 9258967  T
Q  508 gacgaagaattgtaatttcgatgatttcgtcttcgtgacctttttcatcttcgaagacgaggatgtgagttttggggagtagtttttgcggtggttggcc 607  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9258968 gacgaagaattgtaatttcgatgatttcgttttcgtgatctttttcatcttcgaagacgaggatgtgagttttggggagtggtttttgcggtggttggcc 9259067  T
Q  608 gtgagaattttggtggttggtgacatttatgaaagtcactgacgccgtcagcggagatagtgatgagtgagaggaaagataagtaatcggcgaccgttac 707  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9259068 gtgagaattttggtggttggtgacatttatgaaattcactgacgccgtcagcggagatagtgatgagtgagaggaaagataagtaatcggcgaccgttac 9259167  T
Q  708 agagtgaaggatgaaacaagtgcgtgttgtcttt 741  Q
    ||||||||||||||||||||||||||||||||||    
T  9259168 agagtgaaggatgaaacaagtgcgtgttgtcttt 9259201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 635
Target Start/End: Original strand, 9268476 - 9269090
Alignment:
Q  8 taaacaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgcatttgcatactgtgacatat 107  Q
    ||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||| |||| ||||| || | ||||||||||               
T  9268476 taaacaccctgcaactttttgtccttcgaatttaagcaaattttcacaaaatccttaatcacagaataagcaatacgcccatttgcata----------- 9268564  T
Q  108 aaagagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattcagaatcattgatgtaatatgtaaggtgatcatcaataattctcga 207  Q
     |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||| ||||    
T  9268565 -aagatctaccaacagtgaaggaatttccataaacatggaaacagaaaaatattcagaatcattgatgtaatttgtaaagcaatcatcaataattgtcga 9268663  T
Q  208 agcatcaatcaccaattcacctctacagagcctgagaatcaaagaaacaatatattgtgtggctttccacactttaggacacgctatactcctcaagcga 307  Q
    |||| |||||||| ||| |||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||||||| ||     
T  9268664 agcaccaatcaccgatttacctgtacaaagcctgagaatcaaagaaacaatataatgtttggctttccacactttaggacaaactatactcctcaatcgt 9268763  T
Q  308 ccaaccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttgaa 407  Q
    ||||||||||| ||||||||||||||||||||||| |||||||  ||||||| ||||||   |||||||||| ||||||| |||||||||||||||| ||    
T  9268764 ccaaccaattggagatttgcatcgttttcgatgccacattcgcgaagactctattctagctgaagctgttttgcttcgtatattaatcgttgatgttcaa 9268863  T
Q  408 tcggaattctggttttagatgaaatttgttcgagaagcgattcaac--tgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatg 505  Q
    |||||||| |||||||  ||||||||||||||||||| ||||||||  | ||||||| |||||||||||||||||||||||||||| ||||||   ||||    
T  9268864 tcggaattttggttttgaatgaaatttgttcgagaagggattcaacttttttttttcgctagaagcacgaatcactaaggtgttactgttcca---catg 9268960  T
Q  506 cggacgaagaattgtaatttcgatgatttcgtcttcgtgacctttttcatcttcgaagacgaggatgtgagttttggggagtagtttttgcggtggttgg 605  Q
    |||||||||||||||||||||||||||||||| |  | ||||||||||||||||||||||||| |||||||||||| | ||| |||||||| ||||||||    
T  9268961 cggacgaagaattgtaatttcgatgatttcgtttctgagacctttttcatcttcgaagacgagcatgtgagttttgagaagtggtttttgccgtggttgg 9269060  T
Q  606 ccgtgagaattttggtggttggtgacattt 635  Q
    |||||||| ||||||||||  |||||||||    
T  9269061 ccgtgagagttttggtggtctgtgacattt 9269090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 101 - 519
Target Start/End: Original strand, 9237969 - 9238387
Alignment:
Q  101 gacatataaagagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattcagaatcattgatgtaatatgtaaggtgatcatcaataa 200  Q
    ||||||||||| ||||||||||| |||||||||| ||| ||| |||||| | ||||||||||| ||| ||| || || | || || ||||| || |||||    
T  9237969 gacatataaagtgctaccaacagagaaggaattttcattaacttgaaaaaataaaaatattcaaaattattcatatactttgcaaagtgattatgaataa 9238068  T
Q  201 ttctcgaagcatcaatcaccaattcacctctacagagcctgagaatcaaagaaacaatatattgtgtggctttccacactttaggacacgctatactcct 300  Q
    |  | || ||| || ||| | |||| |||||||||||  |||||||||  ||||||||||  | ||  |  |||||||||  || || | ||||||||||    
T  9238069 tcatggaggcaccattcagcgattcgcctctacagaggttgagaatcattgaaacaatatcatctgcagaattccacactacagaacgccctatactcct 9238168  T
Q  301 caagcgaccaaccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttga 400  Q
    |||  ||||||||||||||||||| || ||||||||||||||||||| || ||||||||||| | |   |||||||||||| | ||| || |||||||||    
T  9238169 caattgaccaaccaattgaagattggcgtcgttttcgatgccgcattggctgagactctgttgttgctgaagctgttttccattgtagatcaatcgttga 9238268  T
Q  401 tgttgaatcggaattctggttttagatgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgttacagttccaca 500  Q
    | || ||| |||||| ||||||| ||||||||||||| |||||  ||||| ||||| | |||||| |||||  |||| |||| ||||||||| |||||||    
T  9238269 tattcaataggaattttggttttggatgaaatttgttggagaatagattccactgtgtcttctcttgaagcgtgaatgactatggtgttacatttccaca 9238368  T
Q  501 tcatgcggacgaagaattg 519  Q
    ||||||| || ||||||||    
T  9238369 tcatgcgaacaaagaattg 9238387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 206 - 519
Target Start/End: Original strand, 9250592 - 9250905
Alignment:
Q  206 gaagcatcaatcaccaattcacctctacagagcctgagaatcaaagaaacaatatattgtgtggctttccacactttaggacacgctatactcctcaagc 305  Q
    |||||| |||||||   |||||||||||||||  |||||||||  ||||||||||  | ||| |  |||||||||  || || | |||||||||||||      
T  9250592 gaagcaccaatcactggttcacctctacagagtttgagaatcattgaaacaatatcatctgtagaattccacactacagaacgcactatactcctcaatt 9250691  T
Q  306 gaccaaccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttg 405  Q
    ||||||||||||||||||| || ||||||||||||||||||| || ||||||||||| | |   |||||||||||| | ||| || |||||||||| ||     
T  9250692 gaccaaccaattgaagattggcgtcgttttcgatgccgcattggctgagactctgttgttgctgaagctgttttccattgtagatcaatcgttgatattc 9250791  T
Q  406 aatcggaattctggttttagatgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatg 505  Q
    ||| |||||| ||||||| ||||||||||||| |||||  ||||| ||||| | |||||| |||||  |||| |||| ||||||||| ||||||||||||    
T  9250792 aataggaattttggttttggatgaaatttgttggagaatagattccactgtgtcttctcttgaagcgtgaatgactatggtgttacatttccacatcatg 9250891  T
Q  506 cggacgaagaattg 519  Q
    || || ||||||||    
T  9250892 cgaacaaagaattg 9250905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 6288163 - 6288103
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6288163 gggtaaagatcctctccatttataacttcttctatttgttgcaatttggagagagatagac 6288103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 3594976 - 3594916
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  3594976 gggtaaagatcctctccatttataactttttccatttattgcaatttggagagagatagac 3594916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 13780617 - 13780557
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  13780617 gggtaaagatcctctccatttataacattttccatttgttgcaatttggagagagatagac 13780557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 41435160 - 41435220
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  41435160 gggtaaagatcctctccatttataactttttttatttgttacaatttggagagagatagac 41435220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 42380312 - 42380252
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42380312 gggttaagatcctctccatttataactttttccatttgttgcaatttggagagagatagac 42380252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 860 - 917
Target Start/End: Original strand, 40254109 - 40254166
Alignment:
Q  860 taaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  40254109 taaagatcctctccatttataactttttccatttgttgcaatttggggagagatagac 40254166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 3594794 - 3594854
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  3594794 gggtcaagatcctctccatttataacttttttcatttgttgcaatttggagagagatagac 3594854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 23459803 - 23459863
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  23459803 gggtcaagatcctctccatttataaatttttccatttgttgcaatttggagagagatagac 23459863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 29188772 - 29188712
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  29188772 gggtcaagatcctctccatttataaatttttccatttgttgcaatttggagagagatagac 29188712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 41435342 - 41435282
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41435342 gggtcaagattctctccatttataactttttccatttgttgcaatttggagagagatagac 41435282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 864 - 917
Target Start/End: Complemental strand, 8988966 - 8988913
Alignment:
Q  864 gatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  8988966 gatcctctccatttataaatttttttatttgttgcaatttggagagagatagac 8988913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 375111 - 375051
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| ||| || ||||||||||||||||||||||||||||    
T  375111 gggttaagatcctctccatttataaatttctccatttgttgcaatttggagagagatagac 375051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 3354737 - 3354797
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||||||    
T  3354737 gggtcaagatcctctccatttataaatttttccatttgttgtaatttggagagagatagac 3354797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 13780435 - 13780495
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  13780435 gggtcaagatcctctccatttataaccttttccacttgttgcaatttggagagagatagac 13780495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 862 - 917
Target Start/End: Complemental strand, 40254283 - 40254228
Alignment:
Q  862 aagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||    
T  40254283 aagatcctcttcatttataacttttttcatttgttgcaatttggagagagatagac 40254228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 763 - 854
Target Start/End: Original strand, 9259220 - 9259301
Alignment:
Q  763 gtgtgtgttgtcttgtgtgcctccctccctatatatacacacacacgtaacacaccgttgttaagaacatctcctc-ttttaatgcgttaatt 854  Q
    ||||||||||||||||||||||||||||||||||||  |||||||           |||||||||||||||||||| ||||||||||||||||    
T  9259220 gtgtgtgttgtcttgtgtgcctccctccctatatatttacacaca-----------gttgttaagaacatctcctctttttaatgcgttaatt 9259301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 857 - 914
Target Start/End: Original strand, 6287979 - 6288036
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagata 914  Q
    |||| ||||||||||||||||||||||||||  ||| |||||||||| ||||||||||    
T  6287979 gggtcaagatcctctccatttataacttttttcattggttgcaatttagagagagata 6288036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 865 - 914
Target Start/End: Complemental strand, 8008795 - 8008746
Alignment:
Q  865 atcctctccatttataactttttctatttgttgcaatttggagagagata 914  Q
    ||||||| |||||||||||||||  |||||||||||||||||||||||||    
T  8008795 atcctcttcatttataacttttttcatttgttgcaatttggagagagata 8008746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 872 - 917
Target Start/End: Complemental strand, 28029928 - 28029883
Alignment:
Q  872 ccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||| || ||| ||||||||||||    
T  28029928 ccatttataactttttctatttgttgtaagttgaagagagatagac 28029883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 859 - 917
Target Start/End: Original strand, 28029766 - 28029824
Alignment:
Q  859 gtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||| ||||  |||| |||||||||| ||||||||||||||  ||||||||||||    
T  28029766 gtaaagatactctatatttctaactttttccatttgttgcaatttatagagagatagac 28029824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 8008622 - 8008683
Alignment:
Q  857 gggtaaagatcctctccatttataac-tttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||| |||||||||| ||||| |||||||||  |||||||||||| |||||    
T  8008622 gggttaagatcctcttcatttataacttttttttatttgttgtgatttggagagaggtagac 8008683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 2e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 855 - 917
Target Start/End: Original strand, 7098150 - 7098212
Alignment:
Q  855 aagggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7098150 aagggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagatagac 7098212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 856 - 917
Target Start/End: Complemental strand, 7545757 - 7545696
Alignment:
Q  856 agggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7545757 agggtaaaaatcatctccatttataactttttctatttgttgcaatttggagagagatagac 7545696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 857 - 914
Target Start/End: Original strand, 32737705 - 32737762
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagata 914  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  32737705 gggtaaagatcctctcgatttataactttttccatttgttgcaatttggagagagata 32737762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 2142250 - 2142310
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  2142250 gggttaagatcctctccatttataaatttttccatttgttgcaatttggagagagatagac 2142310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 7507924 - 7507864
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  7507924 gggttaagatcctctccatttataactttttccatttgttgcaatttgaagagagatagac 7507864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 7506791 - 7506851
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||    
T  7506791 gggttaagatcctctctatttataactttttccatttattgcaatttggagagagatagac 7506851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 866 - 917
Target Start/End: Original strand, 7507758 - 7507809
Alignment:
Q  866 tcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  7507758 tcctctccatttataactttttccatttgttgcaatttagagagagatagac 7507809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 24484997 - 24484937
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||| ||||||||| ||||||  |||||||||||||||||||||||||||    
T  24484997 gggtcaagatcctcttcatttataaatttttccgtttgttgcaatttggagagagatagac 24484937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 862 - 917
Target Start/End: Complemental strand, 7098329 - 7098274
Alignment:
Q  862 aagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||    
T  7098329 aagatcctctctatttataatttttttcatttgttgcaatttggagagagatagac 7098274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 883 - 916
Target Start/End: Original strand, 7545597 - 7545630
Alignment:
Q  883 tttttctatttgttgcaatttggagagagataga 916  Q
    |||||| |||||||||||||||||||||||||||    
T  7545597 tttttccatttgttgcaatttggagagagataga 7545630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 57; Significance: 3e-23; HSPs: 2)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 4657 - 4717
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4657 gggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagatagac 4717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 862 - 917
Target Start/End: Complemental strand, 4834 - 4779
Alignment:
Q  862 aagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  4834 aagatcctctccatttataactttttccatttgttgtaatttggagagagatagac 4779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 30102612 - 30102552
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30102612 gggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagatagac 30102552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 32520286 - 32520346
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32520286 gggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagatagac 32520346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 856 - 917
Target Start/End: Original strand, 14696713 - 14696774
Alignment:
Q  856 agggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  14696713 agggtaaagatcctctccatttataattttttccatttgttgcaatttggagagagatagac 14696774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 4269116 - 4269176
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4269116 gggtcaagatcctctccatttataactttttccatttgttgcaatttggagagagatagac 4269176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 32520448 - 32520388
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32520448 gggtcaagatcctctccatttataactttttccatttgttgcaatttggagagagatagac 32520388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 863 - 917
Target Start/End: Complemental strand, 14696890 - 14696836
Alignment:
Q  863 agatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14696890 agatcctctccatttataactttttccatttgttgcaatttggagagagatagac 14696836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 28528669 - 28528609
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  28528669 gggtcaagatcctctccatttataaatttttttatttgttgcaatttggagagagatagac 28528609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 30102430 - 30102490
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  30102430 gggtcaagatcctctccatttataaccttttccatttgttgcaatttggagagagatagac 30102490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 47799857 - 47799917
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  47799857 gggtcaagatcctctccatttataaatttttccatttgttgcaatttggagagagatagac 47799917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 857 - 916
Target Start/End: Complemental strand, 19027822 - 19027763
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagataga 916  Q
    |||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  19027822 gggtcaagatcctcttcatttataactttttccatttgttgcaatttggagagagataga 19027763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 857 - 916
Target Start/End: Original strand, 20726814 - 20726873
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagataga 916  Q
    |||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  20726814 gggtcaagatcctcttcatttataactttttccatttgttgcaatttggagagagataga 20726873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 855 - 917
Target Start/End: Complemental strand, 47080549 - 47080487
Alignment:
Q  855 aagggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  47080549 aagggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagagatagac 47080487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 859 - 917
Target Start/End: Complemental strand, 31236283 - 31236225
Alignment:
Q  859 gtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||||||||| |||||  || |||||||||||||||||||||||||    
T  31236283 gtaaagatcctctccatttataatttttttcatgtgttgcaatttggagagagatagac 31236225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 856 - 912
Target Start/End: Complemental strand, 4269296 - 4269240
Alignment:
Q  856 agggtaaagatcctctccatttataactttttctatttgttgcaatttggagagaga 912  Q
    ||||||||||| |||||||||||||| |||||  |||||||||||||||||||||||    
T  4269296 agggtaaagattctctccatttataatttttttcatttgttgcaatttggagagaga 4269240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 19027636 - 19027700
Alignment:
Q  857 gggtaaagatcctctccatttataa----ctttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||    ||||||| ||||||| ||||||||||||||||||||    
T  19027636 gggtaaagatcctctccatttataactttctttttccatttgttacaatttggagagagatagac 19027700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 20727000 - 20726936
Alignment:
Q  857 gggtaaagatcctctccatttataa----ctttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||    ||||||| ||||||| ||||||||||||||||||||    
T  20727000 gggtaaagatcctctccatttataactttctttttccatttgttacaatttggagagagatagac 20726936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 863 - 917
Target Start/End: Complemental strand, 30588647 - 30588593
Alignment:
Q  863 agatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  ||||||||||    
T  30588647 agatcctctccatttataaatttttccatttgttgcaatttgggaagagatagac 30588593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 871 - 917
Target Start/End: Complemental strand, 35737217 - 35737171
Alignment:
Q  871 tccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  35737217 tccatttataaatttttccatttgttgcaatttggagagagatagac 35737171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 865 - 916
Target Start/End: Original strand, 19888999 - 19889050
Alignment:
Q  865 atcctctccatttataactttttctatttgttgcaatttggagagagataga 916  Q
    ||||||||||||||||| ||||| ||||||||||||||| || |||||||||    
T  19888999 atcctctccatttataaatttttttatttgttgcaatttagaaagagataga 19889050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 849 - 881
Target Start/End: Complemental strand, 18803345 - 18803313
Alignment:
Q  849 ttaattaagggtaaagatcctctccatttataa 881  Q
    |||||||||||||||||||||||||||||||||    
T  18803345 ttaattaagggtaaagatcctctccatttataa 18803313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 865 - 917
Target Start/End: Complemental strand, 33057268 - 33057215
Alignment:
Q  865 atcctctccatttataactttttcta-tttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||| ||||| |  ||||||| |||||||||||||||||||    
T  33057268 atcctctccatttataattttttttcgtttgttgtaatttggagagagatagac 33057215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 3e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 17492939 - 17492999
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17492939 gggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagatagac 17492999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 857 - 916
Target Start/End: Complemental strand, 32146621 - 32146562
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagataga 916  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32146621 gggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagataga 32146562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 856 - 917
Target Start/End: Original strand, 46238902 - 46238963
Alignment:
Q  856 agggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46238902 agggtcaagatcctctccatttataactttttccatttgttgcaatttggagagagatagac 46238963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 46239085 - 46239025
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  46239085 gggtaaagatcctctccatttataactttttccatttgttgcaatttgaagagagatagac 46239025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 53526025 - 53526085
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  53526025 gggtcaagatcctctccatttataactttttccatttgttgcaatttggagagagatagac 53526085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 53526207 - 53526147
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  53526207 gggtaaagatcctctccatttataacttcttccatttgttgcaatttggagagagatagac 53526147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 854 - 917
Target Start/End: Complemental strand, 17493124 - 17493061
Alignment:
Q  854 taagggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17493124 taagggtcaacatcctttccatttataactttttctatttgttgcaatttggagagagatagac 17493061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 5524565 - 5524505
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  5524565 gggtcaagatcctctccatttataaatttttccatttgttgcaatttggagagagatagac 5524505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 17317325 - 17317265
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  17317325 gggtaaagatgctctcaatttataactttttccatttgttgcaatttggagagagatagac 17317265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 862 - 910
Target Start/End: Original strand, 25218939 - 25218987
Alignment:
Q  862 aagatcctctccatttataactttttctatttgttgcaatttggagaga 910  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25218939 aagatcctctccatttataactttttctatttgttgcaatttggagaga 25218987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 855 - 917
Target Start/End: Original strand, 36688143 - 36688205
Alignment:
Q  855 aagggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||| |||||||||||||||||||| ||| || ||||||||||||||||||||||||||||    
T  36688143 aagggtcaagatcctctccatttataaatttctccatttgttgcaatttggagagagatagac 36688205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 857 - 915
Target Start/End: Complemental strand, 47834682 - 47834624
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatag 915  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  47834682 gggtcaagatcctctccatttataaatttttccatttgttgcaatttggagagagatag 47834624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 865 - 917
Target Start/End: Complemental strand, 25219107 - 25219055
Alignment:
Q  865 atcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  25219107 atcctctccatttataactttttccatttgttgtaatttggagagagatagac 25219055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 28405443 - 28405383
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||||| ||||||||||||    
T  28405443 gggtaaagatcctctccatttataaatttttccatttgttacaatttgaagagagatagac 28405383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 865 - 917
Target Start/End: Original strand, 32146447 - 32146499
Alignment:
Q  865 atcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  32146447 atcctctccatttataactttttccatttgttgcaatttgtagagagatagac 32146499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 55160509 - 55160449
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  55160509 gggtcaagatcctctccatttataatcttttccatttgttgcaatttggagagagatagac 55160449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 56269033 - 56269093
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  56269033 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagagatagac 56269093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 857 - 916
Target Start/End: Complemental strand, 42010235 - 42010176
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagataga 916  Q
    |||| |||||||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  42010235 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagagataga 42010176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 1015811 - 1015871
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||  |||||||||||||| |||||||||||||    
T  1015811 gggttaagatcctctccatttataaattttttcatttgttgcaatttagagagagatagac 1015871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 865 - 917
Target Start/End: Complemental strand, 5361536 - 5361484
Alignment:
Q  865 atcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  5361536 atcctcttcatttataaatttttccatttgttgcaatttggagagagatagac 5361484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 862 - 917
Target Start/End: Original strand, 28405266 - 28405321
Alignment:
Q  862 aagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||| |||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  28405266 aagattctctccatttataatttttttcatttgttgcaatttggagagagatagac 28405321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 17317145 - 17317204
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||    
T  17317145 gggtcaagatcctc-ccatttataactttttccatttattgtaatttggagagagatagac 17317204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 37002208 - 37002268
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| ||| || |||| |||||||||||| ||||||||||    
T  37002208 gggttaagatcctctccatttataaatttctccatttattgcaatttggaaagagatagac 37002268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 877 - 917
Target Start/End: Original strand, 55160347 - 55160387
Alignment:
Q  877 tataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  55160347 tataactttttccatttgttgcaatttggaaagagatagac 55160387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 871 - 917
Target Start/End: Original strand, 28701805 - 28701851
Alignment:
Q  871 tccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||| ||| || |||||||| |||||||||||||||||||    
T  28701805 tccatttataaatttatccatttgttggaatttggagagagatagac 28701851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 1e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 858 - 917
Target Start/End: Original strand, 17867617 - 17867676
Alignment:
Q  858 ggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17867617 ggtaaagatcctctccatttataactttttccatttgttgcaatttggagagagatagac 17867676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 857 - 916
Target Start/End: Complemental strand, 30905080 - 30905021
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagataga 916  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  30905080 gggtaaagatcctctccatttataattttttccatttgttgcaatttggagagagataga 30905021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 1937111 - 1937171
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  1937111 gggtcaagatcctctccatttataaatttttcaatttgttgcaatttggagagagatagac 1937171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 17867798 - 17867738
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  17867798 gggttaagatcctctccatttataactttttccatttgttgaaatttggagagagatagac 17867738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 862 - 917
Target Start/End: Original strand, 11090445 - 11090500
Alignment:
Q  862 aagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||    
T  11090445 aagattctttccatttataactttttctatttgttgcaatttagagagagatagac 11090500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 24241782 - 24241722
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||| ||||||||||| || |||||||||||||    
T  24241782 gggtcaagatcctctccatttataaatttttccatttgttgcaagttagagagagatagac 24241722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 865 - 917
Target Start/End: Original strand, 26749513 - 26749565
Alignment:
Q  865 atcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  26749513 atcctctccatttataaattttttcatttgttgcaatttggagagagatagac 26749565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 862 - 917
Target Start/End: Original strand, 30904903 - 30904958
Alignment:
Q  862 aagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||||||||||||| |||| || |||||| |||||||||||||    
T  30904903 aagatcctctccatttataactttttccatttattacaatttagagagagatagac 30904958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 859 - 917
Target Start/End: Complemental strand, 11090622 - 11090564
Alignment:
Q  859 gtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||| ||| ||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  11090622 gtaaatatcttctccatttataaatttttcaatttgttgcaatttggagagtgatagac 11090564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 865 - 917
Target Start/End: Complemental strand, 34612674 - 34612622
Alignment:
Q  865 atcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||| |||||| |||| ||| ||||| |||||||||||||    
T  34612674 atcctctccatttataaatttttccatttattgtaatttagagagagatagac 34612622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 856 - 917
Target Start/End: Complemental strand, 25751 - 25690
Alignment:
Q  856 agggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  25751 agggtaaagatcctctacatttataactttttccatttgttgcaatttggagagagatagac 25690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 36290720 - 36290660
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36290720 gggtcaagatcctctccatttataaatttttctatttgttgcaatttggagagagatagac 36290660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 40162666 - 40162726
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40162666 gggtcaagatcctctccatttataactttttctatttgttgcaatttgaagagagatagac 40162726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 11960546 - 11960606
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  11960546 gggtcaagatcctctccatttataaatttttctatttgttacaatttagagagagatagac 11960606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 857 - 916
Target Start/End: Original strand, 3041264 - 3041323
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagataga 916  Q
    |||| |||||||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  3041264 gggtcaagatcctctccatttataaattttttcatttgttgcaatttggagagagataga 3041323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 859 - 908
Target Start/End: Complemental strand, 8675137 - 8675088
Alignment:
Q  859 gtaaagatcctctccatttataactttttctatttgttgcaatttggaga 908  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||    
T  8675137 gtaaagatcctctccatttataacttttttcatttgttgcaatttggaga 8675088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 2984347 - 2984407
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||  |||||||| |||||||||||||||||||    
T  2984347 gggtcaagatcctctccatttataaattttttcatttgttgtaatttggagagagatagac 2984407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 865 - 917
Target Start/End: Complemental strand, 40162840 - 40162788
Alignment:
Q  865 atcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||    
T  40162840 atcctctccatttataactttttttatttgttgtaatttggaaagagatagac 40162788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 912
Target Start/End: Original strand, 2883121 - 2883176
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagaga 912  Q
    ||||||| ||||||||||||||||| |||||| |||| ||| ||||| ||||||||    
T  2883121 gggtaaacatcctctccatttataattttttccatttattgtaatttagagagaga 2883176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 878 - 917
Target Start/End: Complemental strand, 41660203 - 41660164
Alignment:
Q  878 ataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  41660203 ataaatttttccatttgttgcaatttggagagagatagac 41660164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 857 - 907
Target Start/End: Complemental strand, 2883825 - 2883775
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggag 907  Q
    |||| |||||||||||||||||| |||||||  ||||||||||||| ||||    
T  2883825 gggttaagatcctctccatttattacttttttcatttgttgcaattaggag 2883775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 18107278 - 18107338
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  18107278 gggtaaagatcctctccatttataacttttttcatttgttgcaatttggagagagatagac 18107338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 859 - 917
Target Start/End: Complemental strand, 36004944 - 36004886
Alignment:
Q  859 gtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  36004944 gtaaagatcctctccatttataacttttttcatttgttgcaatttggagagagatagac 36004886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 6948787 - 6948847
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  6948787 gggtaaagatcctctccatttataatttttttcatttgttgcaatttggagagagatagac 6948847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 862 - 917
Target Start/End: Complemental strand, 18107455 - 18107400
Alignment:
Q  862 aagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  18107455 aagatcctctccatttataactttttccatttgttacaatttggagagagatagac 18107400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 856 - 917
Target Start/End: Original strand, 13615297 - 13615358
Alignment:
Q  856 agggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||    
T  13615297 agggtaaagatcctctacatttataactttttccatttgttgcaattttgagaaagatagac 13615358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 52279996 - 52280056
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  52279996 gggttaagatcctctccatttataaattttttcatttgttgcaatttggagagagatagac 52280056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 858 - 917
Target Start/End: Complemental strand, 20507668 - 20507609
Alignment:
Q  858 ggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||| ||| |||||||||||| |||||||| |||||||||||||||||||    
T  20507668 ggtaaagatcctctacatatataactttttccatttgttgtaatttggagagagatagac 20507609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 30077601 - 30077661
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||  |||| |||||||||||||||||||||||    
T  30077601 gggtcaagatcctctccatttataaattttttcatttattgcaatttggagagagatagac 30077661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 862 - 917
Target Start/End: Complemental strand, 6948965 - 6948910
Alignment:
Q  862 aagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    ||||| ||||| ||||||||||||||  ||||||||||||||| ||||||||||||    
T  6948965 aagattctctctatttataacttttttcatttgttgcaatttgaagagagatagac 6948910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 53642069 - 53642129
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53642069 gggttaagattctctccatttataattttttctatttgttgcaatttggagagagatagac 53642129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 27959208 - 27959148
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||    
T  27959208 gggtcaagatcctctccatttataaatttttccatttgttgcaatttggggagagatagac 27959148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 917
Target Start/End: Complemental strand, 28792497 - 28792437
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||| |||||| ||||||||||||||  |||||||||||||||||||||||||||||||||    
T  28792497 gggttaagatcatctccatttataaccatttctatttgttgcaatttggagagagatagac 28792437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 853 - 917
Target Start/End: Complemental strand, 42613202 - 42613138
Alignment:
Q  853 ttaagggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||| |||||||||||||||||||| |||||  ||||||||||||||| ||||||||||||    
T  42613202 ttaagggtcaagatcctctccatttataaattttttcatttgttgcaatttgaagagagatagac 42613138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 862 - 917
Target Start/End: Original strand, 49679232 - 49679287
Alignment:
Q  862 aagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  49679232 aagatcctctccatttataaattttttcatttgttgcaatttggagagagatagac 49679287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 864 - 916
Target Start/End: Complemental strand, 45799193 - 45799141
Alignment:
Q  864 gatcctctccatttataactttttctatttgttgcaatttggagagagataga 916  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  45799193 gatcctctccatttataacatttttcatttgttgcaatttggagagagataga 45799141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 857 - 912
Target Start/End: Original strand, 28792331 - 28792386
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagaga 912  Q
    |||||||||||||||||||||||||  ||||  |||||||||||||||||||||||    
T  28792331 gggtaaagatcctctccatttataatatttttcatttgttgcaatttggagagaga 28792386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 862 - 917
Target Start/End: Original strand, 31523630 - 31523685
Alignment:
Q  862 aagatcctctccatttataactttttctatttgttgcaatttggagagagatagac 917  Q
    |||||||||||||||||||| ||| || |||| |||||||||||||||||||||||    
T  31523630 aagatcctctccatttataaatttctccatttattgcaatttggagagagatagac 31523685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 859 - 914
Target Start/End: Original strand, 45799015 - 45799073
Alignment:
Q  859 gtaaagatcctctccatttataactttttc---tatttgttgcaatttggagagagata 914  Q
    ||||| ||||||||||||||||||||||||   |||||||||||||||||||| |||||    
T  45799015 gtaaaaatcctctccatttataactttttccaatatttgttgcaatttggagaaagata 45799073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 912
Target Start/End: Complemental strand, 53642248 - 53642193
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagaga 912  Q
    |||| ||||| ||||||||||||||| ||||| ||||||||||||  |||||||||    
T  53642248 gggttaagattctctccatttataacgttttccatttgttgcaatccggagagaga 53642193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 857 - 916
Target Start/End: Original strand, 3030 - 3089
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagataga 916  Q
    |||| |||| ||||||||||||||| |||||  |||||||| ||||||||||||||||||    
T  3030 gggttaagaccctctccatttataaattttttcatttgttgtaatttggagagagataga 3089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 857 - 916
Target Start/End: Original strand, 3050 - 3109
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagagataga 916  Q
    |||| |||| ||||||||||||||| |||||  |||||||| ||||||||||||||||||    
T  3050 gggttaagaccctctccatttataaattttttcatttgttgtaatttggagagagataga 3109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 857 - 912
Target Start/End: Original strand, 17261 - 17316
Alignment:
Q  857 gggtaaagatcctctccatttataactttttctatttgttgcaatttggagagaga 912  Q
    |||| |||||||||||||||||||| ||| |  |||||||||||||||||||||||    
T  17261 gggtcaagatcctctccatttataaatttcttcatttgttgcaatttggagagaga 17316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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