View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4956-Insertion-3 (Length: 671)

Name: NF4956-Insertion-3
Description: NF4956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4956-Insertion-3
NF4956-Insertion-3
[»] chr3 (1 HSPs)
chr3 (12-671)||(35271304-35271965)
[»] chr4 (2 HSPs)
chr4 (336-371)||(9669421-9669456)
chr4 (191-253)||(30227292-30227354)
[»] chr7 (4 HSPs)
chr7 (137-203)||(8167212-8167278)
chr7 (353-382)||(18800537-18800566)
chr7 (331-371)||(26526367-26526407)
chr7 (319-371)||(48983691-48983743)
[»] chr5 (1 HSPs)
chr5 (337-371)||(6687737-6687771)
[»] chr8 (4 HSPs)
chr8 (294-371)||(33727831-33727908)
chr8 (303-367)||(27979207-27979271)
chr8 (303-367)||(28036476-28036540)
chr8 (331-371)||(31087216-31087256)
[»] chr2 (1 HSPs)
chr2 (319-371)||(21195634-21195686)
[»] chr1 (1 HSPs)
chr1 (335-371)||(16862961-16862997)


Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 12 - 671
Target Start/End: Original strand, 35271304 - 35271965
Alignment:
Q  12 agaggtttaagatgagacataccttatgtaatgttactcaaaaacaatattattgacaaattaacaaaggaaaatgtttcttaaaaattccaatgtgtat 111  Q
    |||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  35271304 agaggtttaaaatgagacataccttaggtaatggtactcaaaaacaatattattgacaaattaacaaaggaaaatgtttcttagaaatttcaatgtgtat 35271403  T
Q  112 acacgtcttaagagagatagagataaaagagagtgatgtactagatgcaataaattaatgatgtgatagaaagaaataaatagagagaaaatgagatatt 211  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35271404 acacgccttaagagagatagagataaaagagagtgatgtactagatgcaataaattaatgatgtgatagaaagaaatagatagagagaaaatgagatatt 35271503  T
Q  212 gaatgtatataagaaaatttaaggtgtttaaatatcattgttgatagattaaaggtcttgaacatatgctttcaaaataatagaagtgagatcctcctca 311  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  35271504 gaatgcatataagaaaatttaaggtgtctaaatatcattgttgatagattaaaggtcttgaacatatgctttcaaaataatagaagtgtgatcctcctta 35271603  T
Q  312 aaattttaggtttgatttcctcccgtgtcaatttggataggctaatttaacttcttaa---aataataataataaaagtgaaaccaagataatgataata 408  Q
    || ||| |||||||||||| ||| |  |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  35271604 aagtttcaggtttgatttcatcctggatcaatttggataggctaatttaacttcttaaaataataataataataaaagtgaaaccaagataatgataata 35271703  T
Q  409 tgacatcactaagatttgatacattatgaatcttttgaactttcgtttcaaatttgttatccatgatgatttaaggtgcctaaactgaatgattgtatga 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35271704 tgacatcactaagatttgatacattatgaatcttttgaactttcgtttcaaatttgttatccatgatgatttaaggtgcctaaactgaatgattgtatga 35271803  T
Q  509 gttgagcgtagtgtaaccgtattctagagggaaaatgcagtaacaaaacgtgatatttcgtgggccttaaacaagaaargggagggttggaccactgttg 608  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35271804 gttgagcgtagcgtaaccgtattctagagggaaaatgcagtaacaaaacgtgatatttcgtgggccttaaacaagaaa-gggagggttggaccactgttg 35271902  T
Q  609 catgcttctcctttcgtaacgtaaacatgcttaattgcccaacaatgcgacacctactactca 671  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35271903 catgcttctccttttgtaacgtaaacatgcttaattgcccaacaatgcgacacctactactca 35271965  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 371
Target Start/End: Original strand, 9669421 - 9669456
Alignment:
Q  336 gtgtcaatttggataggctaatttaacttcttaaaa 371  Q
    |||||||||||||| |||||||||||||||||||||    
T  9669421 gtgtcaatttggatgggctaatttaacttcttaaaa 9669456  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 30227292 - 30227354
Alignment:
Q  191 atagagagaaaatgagatattgaatgtatataagaaaatttaaggtgtttaaatatcattgtt 253  Q
    ||||| ||||||||||||||| |||| || | |||||||  ||||||| ||||||||||||||    
T  30227292 atagatagaaaatgagatattaaatgaatgttagaaaataaaaggtgtctaaatatcattgtt 30227354  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 8167278 - 8167212
Alignment:
Q  137 aaagagagtgatgtactagatgcaataaattaatgatgtgatagaaagaaataaatagagagaaaat 203  Q
    ||||| |||||| || |||||| |||||||||||||| ||||||||||| | ||||  |||||||||    
T  8167278 aaagatagtgatttaatagatgtaataaattaatgatatgatagaaagatagaaattaagagaaaat 8167212  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 382
Target Start/End: Complemental strand, 18800566 - 18800537
Alignment:
Q  353 ctaatttaacttcttaaaataataataata 382  Q
    ||||||||||||||||||||||||||||||    
T  18800566 ctaatttaacttcttaaaataataataata 18800537  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 26526367 - 26526407
Alignment:
Q  331 ctcccgtgtcaatttggataggctaatttaacttcttaaaa 371  Q
    |||| |||||||||||||| || ||||||||||||||||||    
T  26526367 ctccggtgtcaatttggatgggttaatttaacttcttaaaa 26526407  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 48983743 - 48983691
Alignment:
Q  319 aggtttgatttcctcccgtgtcaatttggataggctaatttaacttcttaaaa 371  Q
    ||||| |||| ||||  |||||||||||| | |||||||||||||||||||||    
T  48983743 aggttcgattccctctagtgtcaatttgggtgggctaatttaacttcttaaaa 48983691  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 371
Target Start/End: Original strand, 6687737 - 6687771
Alignment:
Q  337 tgtcaatttggataggctaatttaacttcttaaaa 371  Q
    |||||||||| ||||||||||||||||||||||||    
T  6687737 tgtcaatttgaataggctaatttaacttcttaaaa 6687771  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 371
Target Start/End: Complemental strand, 33727908 - 33727831
Alignment:
Q  294 gaagtgagatcctcctcaaaattttaggtttgatttcctcccgtgtcaatttggataggctaatttaacttcttaaaa 371  Q
    |||||| | ||||||||||  | | ||||| |||| ||||  |||||||||||||| |||||||||| ||||||||||    
T  33727908 gaagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggctaatttagcttcttaaaa 33727831  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 367
Target Start/End: Original strand, 27979207 - 27979271
Alignment:
Q  303 tcctcctcaaaattttaggtttgatttcctcccgtgtcaatttggataggctaatttaacttctt 367  Q
    ||||||||||| | ||| ||| ||||  |||  |||||||||||||| |||||||||||||||||    
T  27979207 tcctcctcaaagtcttaagttcgattatctctagtgtcaatttggatgggctaatttaacttctt 27979271  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 367
Target Start/End: Original strand, 28036476 - 28036540
Alignment:
Q  303 tcctcctcaaaattttaggtttgatttcctcccgtgtcaatttggataggctaatttaacttctt 367  Q
    ||||||||||| | ||| ||| ||||  |||  |||||||||||||| |||||||||||||||||    
T  28036476 tcctcctcaaagtcttaagttcgattatctctagtgtcaatttggatgggctaatttaacttctt 28036540  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 31087256 - 31087216
Alignment:
Q  331 ctcccgtgtcaatttggataggctaatttaacttcttaaaa 371  Q
    |||| ||||||||||  ||||||||||||||||||||||||    
T  31087256 ctccggtgtcaatttaaataggctaatttaacttcttaaaa 31087216  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 21195686 - 21195634
Alignment:
Q  319 aggtttgatttcctcccgtgtcaatttggataggctaatttaacttcttaaaa 371  Q
    ||||| |||| ||||  |||||||||||||| |||||||||| ||||||||||    
T  21195686 aggttcgattccctctagtgtcaatttggatgggctaatttagcttcttaaaa 21195634  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 16862997 - 16862961
Alignment:
Q  335 cgtgtcaatttggataggctaatttaacttcttaaaa 371  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  16862997 cgtgtcaattttgataggttaatttaacttcttaaaa 16862961  T

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