View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4956-Insertion-6 (Length: 472)

Name: NF4956-Insertion-6
Description: NF4956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4956-Insertion-6
NF4956-Insertion-6
[»] scaffold0259 (1 HSPs)
scaffold0259 (7-472)||(19116-19571)
[»] chr7 (23 HSPs)
chr7 (336-464)||(49067279-49067407)
chr7 (152-197)||(21099792-21099837)
chr7 (155-195)||(8227348-8227388)
chr7 (153-188)||(1398417-1398452)
chr7 (158-197)||(42336067-42336106)
chr7 (155-197)||(25246768-25246810)
chr7 (155-197)||(44558796-44558838)
chr7 (155-188)||(4340133-4340166)
chr7 (152-197)||(5526722-5526767)
chr7 (155-188)||(7872770-7872803)
chr7 (155-188)||(8615029-8615062)
chr7 (155-188)||(18714454-18714487)
chr7 (155-188)||(19982110-19982143)
chr7 (155-188)||(21050244-21050277)
chr7 (155-188)||(24991787-24991820)
chr7 (155-188)||(33610947-33610980)
chr7 (155-188)||(39926560-39926593)
chr7 (155-188)||(46987092-46987125)
chr7 (155-199)||(5458093-5458137)
chr7 (155-187)||(27833423-27833455)
chr7 (155-199)||(28012636-28012680)
chr7 (158-202)||(28703500-28703544)
chr7 (155-195)||(37451259-37451299)
[»] chr6 (11 HSPs)
chr6 (390-472)||(31989775-31989857)
chr6 (152-189)||(5008844-5008881)
chr6 (155-200)||(32193881-32193926)
chr6 (155-196)||(33824879-33824920)
chr6 (152-184)||(14515311-14515343)
chr6 (154-189)||(26521136-26521171)
chr6 (155-197)||(8138480-8138522)
chr6 (155-197)||(18256880-18256922)
chr6 (154-188)||(26522478-26522512)
chr6 (155-188)||(20720803-20720836)
chr6 (154-194)||(9923240-9923280)
[»] chr4 (21 HSPs)
chr4 (155-201)||(33413352-33413398)
chr4 (155-197)||(14577529-14577571)
chr4 (155-200)||(8027419-8027464)
chr4 (155-195)||(18915068-18915108)
chr4 (146-197)||(14136088-14136139)
chr4 (155-194)||(34247440-34247479)
chr4 (155-197)||(7230277-7230319)
chr4 (155-197)||(36203233-36203275)
chr4 (155-197)||(39842034-39842076)
chr4 (155-188)||(12439670-12439703)
chr4 (155-188)||(22279542-22279575)
chr4 (155-200)||(38812871-38812916)
chr4 (155-188)||(42756128-42756161)
chr4 (155-188)||(46676520-46676553)
chr4 (155-188)||(49949340-49949373)
chr4 (155-200)||(56204941-56204986)
chr4 (155-188)||(56551614-56551647)
chr4 (154-186)||(24785483-24785515)
chr4 (154-186)||(24822751-24822783)
chr4 (152-188)||(25999403-25999439)
chr4 (155-187)||(46434782-46434814)
[»] chr1 (20 HSPs)
chr1 (155-195)||(24124852-24124892)
chr1 (155-197)||(31890771-31890813)
chr1 (155-188)||(34808585-34808618)
chr1 (152-188)||(3886709-3886745)
chr1 (155-189)||(2817395-2817429)
chr1 (154-188)||(32030926-32030960)
chr1 (155-189)||(34253735-34253769)
chr1 (155-197)||(34733397-34733439)
chr1 (155-197)||(44641524-44641566)
chr1 (155-197)||(49183170-49183212)
chr1 (155-200)||(3509963-3510008)
chr1 (155-188)||(17283957-17283990)
chr1 (155-188)||(38448888-38448921)
chr1 (155-188)||(41926828-41926861)
chr1 (155-188)||(50638938-50638971)
chr1 (152-197)||(51127909-51127954)
chr1 (156-188)||(23228518-23228550)
chr1 (155-195)||(33577928-33577968)
chr1 (156-188)||(47133327-47133359)
chr1 (156-188)||(47528470-47528502)
[»] chr2 (30 HSPs)
chr2 (155-198)||(43117212-43117255)
chr2 (150-200)||(2661065-2661115)
chr2 (155-188)||(24393251-24393284)
chr2 (155-195)||(12124544-12124584)
chr2 (155-195)||(28771581-28771621)
chr2 (155-195)||(39761437-39761477)
chr2 (155-197)||(3197101-3197143)
chr2 (154-188)||(7413210-7413244)
chr2 (155-197)||(10332297-10332339)
chr2 (158-200)||(19976147-19976189)
chr2 (155-197)||(20517019-20517061)
chr2 (155-197)||(28277698-28277740)
chr2 (155-197)||(34464431-34464473)
chr2 (155-189)||(35685083-35685117)
chr2 (155-200)||(8387907-8387952)
chr2 (155-188)||(12124690-12124723)
chr2 (155-188)||(18231495-18231528)
chr2 (155-188)||(19179072-19179105)
chr2 (155-188)||(20120743-20120776)
chr2 (155-188)||(24593382-24593415)
chr2 (155-196)||(25186264-25186305)
chr2 (155-188)||(29350067-29350100)
chr2 (155-188)||(39068730-39068763)
chr2 (155-188)||(40099405-40099438)
chr2 (155-200)||(44496722-44496767)
chr2 (155-187)||(5980234-5980266)
chr2 (136-188)||(7052779-7052830)
chr2 (155-199)||(20565097-20565141)
chr2 (155-199)||(25598584-25598628)
chr2 (155-187)||(31963088-31963120)
[»] scaffold0005 (1 HSPs)
scaffold0005 (155-197)||(239804-239846)
[»] chr5 (17 HSPs)
chr5 (155-201)||(16133087-16133133)
chr5 (152-200)||(17672319-17672367)
chr5 (157-199)||(6226328-6226370)
chr5 (155-197)||(17861976-17862018)
chr5 (155-189)||(18147723-18147757)
chr5 (155-197)||(36321516-36321558)
chr5 (155-197)||(40445980-40446022)
chr5 (155-188)||(5846035-5846068)
chr5 (155-200)||(8545011-8545056)
chr5 (152-197)||(10199016-10199061)
chr5 (155-188)||(11844460-11844493)
chr5 (155-200)||(21308963-21309008)
chr5 (155-200)||(21316876-21316921)
chr5 (155-200)||(23118073-23118118)
chr5 (152-189)||(37054288-37054325)
chr5 (155-200)||(39610363-39610408)
chr5 (152-200)||(4262558-4262606)
[»] chr8 (13 HSPs)
chr8 (155-195)||(42208491-42208531)
chr8 (154-188)||(1244726-1244760)
chr8 (155-197)||(8717497-8717539)
chr8 (155-197)||(17704010-17704052)
chr8 (155-188)||(8910003-8910036)
chr8 (154-187)||(19488307-19488340)
chr8 (155-188)||(19778071-19778104)
chr8 (155-188)||(30623299-30623332)
chr8 (158-195)||(35372123-35372160)
chr8 (155-200)||(37750021-37750066)
chr8 (157-198)||(41162662-41162703)
chr8 (154-186)||(5179801-5179833)
chr8 (155-199)||(19701366-19701410)
[»] scaffold2055 (1 HSPs)
scaffold2055 (141-188)||(1043-1090)
[»] scaffold0180 (1 HSPs)
scaffold0180 (158-200)||(17726-17768)
[»] chr3 (21 HSPs)
chr3 (155-197)||(1149091-1149133)
chr3 (155-197)||(4216421-4216463)
chr3 (154-188)||(13992677-13992711)
chr3 (155-197)||(16980376-16980418)
chr3 (155-197)||(21331439-21331481)
chr3 (155-197)||(47099350-47099392)
chr3 (155-197)||(52904165-52904207)
chr3 (155-189)||(54230121-54230155)
chr3 (150-187)||(2151067-2151104)
chr3 (155-200)||(3755333-3755378)
chr3 (155-200)||(5117202-5117247)
chr3 (155-188)||(8113584-8113617)
chr3 (155-188)||(10926475-10926508)
chr3 (155-188)||(30200832-30200865)
chr3 (155-188)||(35191839-35191872)
chr3 (154-187)||(39822193-39822226)
chr3 (155-188)||(45096032-45096065)
chr3 (155-188)||(45254237-45254270)
chr3 (155-188)||(46469283-46469316)
chr3 (155-188)||(52119382-52119415)
chr3 (158-194)||(55198882-55198918)
[»] scaffold0524 (1 HSPs)
scaffold0524 (152-189)||(1239-1276)
[»] scaffold0004 (1 HSPs)
scaffold0004 (155-188)||(91584-91617)
[»] scaffold0154 (1 HSPs)
scaffold0154 (155-195)||(10779-10819)


Alignment Details
Target: scaffold0259 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 472
Target Start/End: Complemental strand, 19571 - 19116
Alignment:
Q  7 agaaacacctatcatctttacggaggtagagcaattgtggaacctaatgtataatgacaaatatgtcacagttatatcaatctctattggtaacnnnnnn 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  19571 agaaacacctatcatctttacggaggtagagcaattgtggaacctaatgtataatgacaaatatgtcacagttatatcaatctctattggtaactttttt 19472  T
Q  107 nnnnnnnnnnnnctgtggtggtccagctctgagccccgtaccttatatatatattatgcattgtccttaacaactgagctaaaatcacgagaacgctctc 206  Q
                ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||    
T  19471 ttttcttt----ctgtggtggtcgagctttgagccccgtaccttatatatatattatgcattgtccttaccaactgatctaaactcacgaggacgctctc 19376  T
Q  207 tattggtaaccgacaacaaagaaacactaaccctttctttactgaatagacagttgagtattcaattttccaagtgaaatcataaaaaatgtcgtttcta 306  Q
    |||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19375 tattggtaaccggcaacaaggagacactaaccctttctttattgaatagacagttgagtattcaattttccaagtgaaatcataaaaaatgtcgtttcta 19276  T
Q  307 ctttaacgaatttcattgtcaaatattaatatataaaaatggaaagtacgaatggaaaatataccatttaactcggcacacttttcttcaatttcatgtt 406  Q
    ||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19275 ctttaacgaatttcattgtcaa------atatataaaaatggaaagtacgaatggaaaatataccatttaactcggcacacttttcttcaatttcatgtt 19182  T
Q  407 tgaactagagaatgtattcactactaacatccatgttatttaaagttgctgcaatatccatccctg 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19181 tgaactagagaatgtattcactactaacatccatgttatttaaagttgctgcaatatccgtccctg 19116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 336 - 464
Target Start/End: Original strand, 49067279 - 49067407
Alignment:
Q  336 tatataaaaatggaaagtacgaatggaaaatataccatttaactcggcacacttttcttcaatttcatgtttgaactagagaatgtattcactactaaca 435  Q
    |||||| ||| |||| |||| |||| |||||||||||  || ||| ||||||| |||||||||||||||||| |||| |||||  |||||||| ||||||    
T  49067279 tatatataaacggaaggtactaatgaaaaatataccacctacctcagcacactgttcttcaatttcatgtttcaacttgagaacatattcactgctaaca 49067378  T
Q  436 tccatgttatttaaagttgctgcaatatc 464  Q
    ||||||||||||||||  |||||||||||    
T  49067379 tccatgttatttaaagccgctgcaatatc 49067407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 21099792 - 21099837
Alignment:
Q  152 tatatatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||    
T  21099792 tatatatattatgcattgtccataccaactgagctaaattcacgag 21099837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 8227388 - 8227348
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacg 195  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  8227388 atatattatgcattgtccttatcaactgagctaaactcacg 8227348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 1398417 - 1398452
Alignment:
Q  153 atatatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1398417 atatatattatgcattgtccttaccaactgagctaa 1398452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 42336106 - 42336067
Alignment:
Q  158 tattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  42336106 tattatgcattgtccttatcaactgagctaaattcacgag 42336067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 25246810 - 25246768
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||    
T  25246810 atatattatgcattgtctttatcaactgagctaaactcacgag 25246768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 44558796 - 44558838
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  44558796 atatattatgcattgtccataccaactgagctaaactcacgag 44558838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 4340166 - 4340133
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  4340166 atatattatgcattgtccttaccaactgagctaa 4340133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 5526767 - 5526722
Alignment:
Q  152 tatatatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| || ||||||||||||  |||||||    
T  5526767 tatatatattatgcattgtccataccaactgagctaagctcacgag 5526722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 7872770 - 7872803
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  7872770 atatattatgcattgtccttaccaactgagctaa 7872803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 8615062 - 8615029
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  8615062 atatattatgcattgtccttaccaactgagctaa 8615029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 18714487 - 18714454
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  18714487 atatattatgcattgtccttaccaactgagctaa 18714454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 19982110 - 19982143
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||| ||||||||||||||||||||||||    
T  19982110 atatattattcattgtccttaacaactgagctaa 19982143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 21050244 - 21050277
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  21050244 atatattatgcattgtccttaccaactgagctaa 21050277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 24991820 - 24991787
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  24991820 atatattatgcattgtccttaccaactgagctaa 24991787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 33610947 - 33610980
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    |||||||||||||||||| |||||||||||||||    
T  33610947 atatattatgcattgtccgtaacaactgagctaa 33610980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 39926560 - 39926593
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  39926560 atatattatgcattgtccttatcaactgagctaa 39926593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 46987125 - 46987092
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  46987125 atatattatgcattgtccttaccaactgagctaa 46987092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 5458093 - 5458137
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaa 199  Q
    |||||||||||||||| |||| ||||||||||||  |||||||||    
T  5458093 atatattatgcattgttcttatcaactgagctaagctcacgagaa 5458137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 27833423 - 27833455
Alignment:
Q  155 atatattatgcattgtccttaacaactgagcta 187  Q
    ||||||||||||||||||||| |||||||||||    
T  27833423 atatattatgcattgtccttaccaactgagcta 27833455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 28012636 - 28012680
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaa 199  Q
    ||||||||||||||||||||| |||||||| |||  |||||||||    
T  28012636 atatattatgcattgtccttaccaactgagttaagctcacgagaa 28012680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 28703544 - 28703500
Alignment:
Q  158 tattatgcattgtccttaacaactgagctaaaatcacgagaacgc 202  Q
    |||||||||||||| ||| ||||||||||||| ||||||| ||||    
T  28703544 tattatgcattgtctttaccaactgagctaaactcacgaggacgc 28703500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 37451259 - 37451299
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacg 195  Q
    |||||||||||||| |||||| ||||||||||||| |||||    
T  37451259 atatattatgcattatccttatcaactgagctaaactcacg 37451299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 390 - 472
Target Start/End: Complemental strand, 31989857 - 31989775
Alignment:
Q  390 ttcttcaatttcatgtttgaactagagaatgtattcactactaacatccatgttatttaaagttgctgcaatatccatccctg 472  Q
    ||||||||||| |||||| |||| |||||  |||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  31989857 ttcttcaatttgatgtttcaacttgagaacatattcactactaacatccatgttatttaaagcagttgcaatatccatccctg 31989775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 5008881 - 5008844
Alignment:
Q  152 tatatatattatgcattgtccttaacaactgagctaaa 189  Q
    |||||||||||||||||||||||| |||||||||||||    
T  5008881 tatatatattatgcattgtccttaccaactgagctaaa 5008844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 32193881 - 32193926
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||    
T  32193881 atatattatgcattgttcttaccaactgagctaaactcacgagaac 32193926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 33824920 - 33824879
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacga 196  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  33824920 atatattatgcattgtccttatcaactgagctaagatcacga 33824879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 14515311 - 14515343
Alignment:
Q  152 tatatatattatgcattgtccttaacaactgag 184  Q
    |||||||||||||||||||||||||||||||||    
T  14515311 tatatatattatgcattgtccttaacaactgag 14515343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 26521136 - 26521171
Alignment:
Q  154 tatatattatgcattgtccttaacaactgagctaaa 189  Q
    |||||||||||||||||||||| |||||||||||||    
T  26521136 tatatattatgcattgtccttaccaactgagctaaa 26521171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 8138480 - 8138522
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    |||||||||||||||| |||| ||||||||||||| |||||||    
T  8138480 atatattatgcattgttcttatcaactgagctaaattcacgag 8138522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 18256922 - 18256880
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  18256922 atatattatgcattgtccttatcaactgagctaagctcacgag 18256880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 26522512 - 26522478
Alignment:
Q  154 tatatattatgcattgtccttaacaactgagctaa 188  Q
    |||||||||||||||||||||| ||||||||||||    
T  26522512 tatatattatgcattgtccttaccaactgagctaa 26522478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 20720803 - 20720836
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    |||||||||||||||||| |||||||||||||||    
T  20720803 atatattatgcattgtccataacaactgagctaa 20720836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 9923280 - 9923240
Alignment:
Q  154 tatatattatgcattgtccttaacaactgagctaaaatcac 194  Q
    |||||||||||||||||||||| ||| ||||||||| ||||    
T  9923280 tatatattatgcattgtccttatcaattgagctaaactcac 9923240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 33413352 - 33413398
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaacg 201  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  33413352 atatattatgcattgtccttatcaactgagctaaattcacgagaacg 33413398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 14577529 - 14577571
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  14577529 atatattatgcattgtccttaccaactgagctaaactcacgag 14577571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 8027419 - 8027464
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||    
T  8027419 atatattatgcattatccttaccaactgagctaaactcacgagaac 8027464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 18915068 - 18915108
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacg 195  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  18915068 atatattatgcattgtccttaccaactgagctaaactcacg 18915108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 14136139 - 14136088
Alignment:
Q  146 accttatatatatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||  |||||||    
T  14136139 accttacatatatattatgcattgtctttatcaactgagctaagctcacgag 14136088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 34247479 - 34247440
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcac 194  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  34247479 atatattatgcattgtccttaccaactgagctaaactcac 34247440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 7230319 - 7230277
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  7230319 atatattatgcattgtccttaccaactgagctaagctcacgag 7230277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 36203275 - 36203233
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  36203275 atatattatgcattgtccttatcaactgagctaagctcacgag 36203233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 39842034 - 39842076
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||    
T  39842034 atatattatgcattgtccttatcaactgagttaagatcacgag 39842076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 12439703 - 12439670
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  12439703 atatattatgcattgtccttatcaactgagctaa 12439670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 22279542 - 22279575
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  22279542 atatattatgcattgtccttaccaactgagctaa 22279575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 38812871 - 38812916
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    |||||||||||||||||| || | ||||||||||| ||||||||||    
T  38812871 atatattatgcattgtccctaccgactgagctaaactcacgagaac 38812916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 42756128 - 42756161
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  42756128 atatattatgcattgtccttatcaactgagctaa 42756161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 46676520 - 46676553
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  46676520 atatattatgcattgtccttaccaactgagctaa 46676553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 49949373 - 49949340
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  49949373 atatattatgcattgtccttaccaactgagctaa 49949340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 56204986 - 56204941
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||    
T  56204986 atatattatgcattgtccttaccaactgagttaaactcacaagaac 56204941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 56551614 - 56551647
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  56551614 atatattatgcattgtccttaccaactgagctaa 56551647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 24785483 - 24785515
Alignment:
Q  154 tatatattatgcattgtccttaacaactgagct 186  Q
    |||||||||||||||||||||| ||||||||||    
T  24785483 tatatattatgcattgtccttaccaactgagct 24785515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 24822783 - 24822751
Alignment:
Q  154 tatatattatgcattgtccttaacaactgagct 186  Q
    |||||||||||||||||||||| ||||||||||    
T  24822783 tatatattatgcattgtccttaccaactgagct 24822751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 25999439 - 25999403
Alignment:
Q  152 tatatatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| || ||||||||||||    
T  25999439 tatatatattatgcattgtccctaccaactgagctaa 25999403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 46434782 - 46434814
Alignment:
Q  155 atatattatgcattgtccttaacaactgagcta 187  Q
    ||||||||||||||||||||| |||||||||||    
T  46434782 atatattatgcattgtccttatcaactgagcta 46434814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 24124852 - 24124892
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacg 195  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  24124852 atatattatgcattgtccttaacaactgagctaaactcacg 24124892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 31890771 - 31890813
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  31890771 atatattatgcattgtccttaccaactgagctaaactcacgag 31890813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 34808585 - 34808618
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||||||||||||||||    
T  34808585 atatattatgcattgtccttaacaactgagctaa 34808618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 3886709 - 3886745
Alignment:
Q  152 tatatatattatgcattgtccttaacaactgagctaa 188  Q
    |||||||||||| ||||||||||||||||||||||||    
T  3886709 tatatatattatacattgtccttaacaactgagctaa 3886745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 2817395 - 2817429
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaa 189  Q
    ||||||||||||||||||||| |||||||||||||    
T  2817395 atatattatgcattgtccttaccaactgagctaaa 2817429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 32030926 - 32030960
Alignment:
Q  154 tatatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||| |||||||||||||||    
T  32030926 tatatattatgcattgtccctaacaactgagctaa 32030960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 34253735 - 34253769
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaa 189  Q
    ||||||||||||||||||||| |||||||||||||    
T  34253735 atatattatgcattgtccttaccaactgagctaaa 34253769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 34733439 - 34733397
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  34733439 atatattatgcattgtccttaccaactgagctaagctcacgag 34733397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 44641566 - 44641524
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  44641566 atatattatgcattgtccatatcaactgagctaaactcacgag 44641524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 49183212 - 49183170
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    |||||||||| |||||||||| ||||||||||||| |||||||    
T  49183212 atatattatgtattgtccttaccaactgagctaaactcacgag 49183170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 3509963 - 3510008
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    |||||||||||||||||| || ||||||||||||  ||||||||||    
T  3509963 atatattatgcattgtccataccaactgagctaagttcacgagaac 3510008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 17283990 - 17283957
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  17283990 atatattatgcattgtccttaccaactgagctaa 17283957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 38448888 - 38448921
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  38448888 atatattatgcattgtccttaccaactgagctaa 38448921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 41926861 - 41926828
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  41926861 atatattatgcattgtccttaccaactgagctaa 41926828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 50638938 - 50638971
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  50638938 atatattatgcattgtccttaccaactgagctaa 50638971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 51127909 - 51127954
Alignment:
Q  152 tatatatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||  |||||||||||| |||||||    
T  51127909 tatatatattatgcattgtccatattaactgagctaaactcacgag 51127954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 23228518 - 23228550
Alignment:
Q  156 tatattatgcattgtccttaacaactgagctaa 188  Q
    |||||||||||||||||||| ||||||||||||    
T  23228518 tatattatgcattgtccttaccaactgagctaa 23228550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 33577968 - 33577928
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacg 195  Q
    ||||||||| ||||||||||| ||||||||||||| |||||    
T  33577968 atatattatacattgtccttagcaactgagctaaactcacg 33577928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 47133359 - 47133327
Alignment:
Q  156 tatattatgcattgtccttaacaactgagctaa 188  Q
    |||||||||||||||||||| ||||||||||||    
T  47133359 tatattatgcattgtccttagcaactgagctaa 47133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 47528470 - 47528502
Alignment:
Q  156 tatattatgcattgtccttaacaactgagctaa 188  Q
    |||||||||||||||||||| ||||||||||||    
T  47528470 tatattatgcattgtccttaccaactgagctaa 47528502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 43117212 - 43117255
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgaga 198  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||    
T  43117212 atatattatgcattgtccttaccaactgagctaaactcacgaga 43117255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 2661065 - 2661115
Alignment:
Q  150 tatatatatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    |||||||||||||||||||||||||| |||||||| |||  ||||||||||    
T  2661065 tatatatatattatgcattgtccttaccaactgagttaagctcacgagaac 2661115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 24393284 - 24393251
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||||||||||||||||    
T  24393284 atatattatgcattgtccttaacaactgagctaa 24393251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 12124584 - 12124544
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacg 195  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  12124584 atatattatgcattgtccttaccaactgagctaaactcacg 12124544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 28771621 - 28771581
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacg 195  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  28771621 atatattatgcattgtccttaccaactgagctaaactcacg 28771581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 39761477 - 39761437
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacg 195  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  39761477 atatattatgcattgtccttatcaactgagctaaactcacg 39761437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 3197101 - 3197143
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  3197101 atatattatgcattgtccctaccaactgagctaaactcacgag 3197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 7413210 - 7413244
Alignment:
Q  154 tatatattatgcattgtccttaacaactgagctaa 188  Q
    |||||||||||||||||||||| ||||||||||||    
T  7413210 tatatattatgcattgtccttaccaactgagctaa 7413244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 10332297 - 10332339
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  10332297 atatattatgcattgtccttatcaactgagctaagctcacgag 10332339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 19976189 - 19976147
Alignment:
Q  158 tattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    ||||||||||||||| || ||||||||||||| ||||||||||    
T  19976189 tattatgcattgtccataccaactgagctaaactcacgagaac 19976147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 20517061 - 20517019
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    |||||||||||||||| |||| ||||||||||||| |||||||    
T  20517061 atatattatgcattgttcttaccaactgagctaaactcacgag 20517019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 28277698 - 28277740
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||    
T  28277698 atatattatgcattgtccttaccaactaagctaaactcacgag 28277740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 34464431 - 34464473
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  34464431 atatattatgcattgtccataccaactgagctaaactcacgag 34464473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 35685083 - 35685117
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaa 189  Q
    ||||||||||||||||||||| |||||||||||||    
T  35685083 atatattatgcattgtccttaccaactgagctaaa 35685117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 8387907 - 8387952
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    ||||||||||||||||||||| ||| |||| |||| ||||||||||    
T  8387907 atatattatgcattgtccttaccaattgagttaaactcacgagaac 8387952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 12124723 - 12124690
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  12124723 atatattatgcattgtccttaccaactgagctaa 12124690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 18231495 - 18231528
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  18231495 atatattatgcattgtccttaccaactgagctaa 18231528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 19179072 - 19179105
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  19179072 atatattatgcattgtccttaccaactgagctaa 19179105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 20120743 - 20120776
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  20120743 atatattatgcattgtccttaccaactgagctaa 20120776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 24593415 - 24593382
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  24593415 atatattatgcattgtccttaccaactgagctaa 24593382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 25186264 - 25186305
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacga 196  Q
    |||||||||||||||||| || ||||||||||||| ||||||    
T  25186264 atatattatgcattgtccatatcaactgagctaaactcacga 25186305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 29350067 - 29350100
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    |||||||||||||| |||||||||||||||||||    
T  29350067 atatattatgcattatccttaacaactgagctaa 29350100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 39068730 - 39068763
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  39068730 atatattatgcattgtccttatcaactgagctaa 39068763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 40099405 - 40099438
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  40099405 atatattatgcattgtccttaccaactgagctaa 40099438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 44496722 - 44496767
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    |||||||||| |||||||||| ||||||||||||  ||||||||||    
T  44496722 atatattatgtattgtccttaccaactgagctaagctcacgagaac 44496767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 5980266 - 5980234
Alignment:
Q  155 atatattatgcattgtccttaacaactgagcta 187  Q
    ||||||||||||||||||||| |||||||||||    
T  5980266 atatattatgcattgtccttatcaactgagcta 5980234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 7052830 - 7052779
Alignment:
Q  136 tgagccccgtaccttatatatatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||| |||||  |||| |||||||||||||||||| ||||||||||||    
T  7052830 tgagccccggaccttgcatat-tattatgcattgtccttaccaactgagctaa 7052779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 20565097 - 20565141
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaa 199  Q
    |||||||||||||||||| || ||||||||||||  |||||||||    
T  20565097 atatattatgcattgtccctaccaactgagctaagctcacgagaa 20565141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 25598584 - 25598628
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaa 199  Q
    |||||||||||||||||| || ||||||||||||  |||||||||    
T  25598584 atatattatgcattgtccataccaactgagctaagttcacgagaa 25598628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 31963088 - 31963120
Alignment:
Q  155 atatattatgcattgtccttaacaactgagcta 187  Q
    ||||||||||||||||||||| |||||||||||    
T  31963088 atatattatgcattgtccttaccaactgagcta 31963120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 239846 - 239804
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  239846 atatattatgcattgtccttaccaactgagctaaactcacgag 239804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 16133087 - 16133133
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaacg 201  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||    
T  16133087 atatattatgcattgtccttaccaactgagctaagctcacgagaacg 16133133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 17672319 - 17672367
Alignment:
Q  152 tatatatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    |||||||||||||||| ||||||| ||||||||||||  ||||||||||    
T  17672319 tatatatattatgcatcgtccttatcaactgagctaagctcacgagaac 17672367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 6226328 - 6226370
Alignment:
Q  157 atattatgcattgtccttaacaactgagctaaaatcacgagaa 199  Q
    |||||| |||||||||||| ||||||||||||| |||||||||    
T  6226328 atattaggcattgtccttaccaactgagctaaattcacgagaa 6226370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 17862018 - 17861976
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  17862018 atatattatgcattgtccctaccaactgagctaaactcacgag 17861976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 18147757 - 18147723
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaa 189  Q
    ||||||||||||||||||||| |||||||||||||    
T  18147757 atatattatgcattgtccttatcaactgagctaaa 18147723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 36321516 - 36321558
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  36321516 atatattatgcattgtccttaccaactgagctaagctcacgag 36321558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 40446022 - 40445980
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| |||||||| |||| |||||||    
T  40446022 atatattatgcattgtccttatcaactgagttaaactcacgag 40445980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 5846068 - 5846035
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  5846068 atatattatgcattgtccttaccaactgagctaa 5846035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 8545011 - 8545056
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    ||||||||||||||||||||| |||||||| |||  ||||||||||    
T  8545011 atatattatgcattgtccttatcaactgagttaagctcacgagaac 8545056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 10199061 - 10199016
Alignment:
Q  152 tatatatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| || ||||||||||||  |||||||    
T  10199061 tatatatattatgcattgtccataccaactgagctaagctcacgag 10199016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 11844460 - 11844493
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  11844460 atatattatgcattgtccttaccaactgagctaa 11844493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 21309008 - 21308963
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    ||||||||||||||||||||| |||||||| |||| ||||| ||||    
T  21309008 atatattatgcattgtccttaccaactgagttaaactcacgggaac 21308963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 21316921 - 21316876
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    ||||||||||||||||||||| |||||||| |||| ||||| ||||    
T  21316921 atatattatgcattgtccttaccaactgagttaaactcacgggaac 21316876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 23118073 - 23118118
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    ||||||||||||||||||||| |||||||| |||  ||||||||||    
T  23118073 atatattatgcattgtccttatcaactgagttaagctcacgagaac 23118118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 37054288 - 37054325
Alignment:
Q  152 tatatatattatgcattgtccttaacaactgagctaaa 189  Q
    ||||||||||||||||||||| || |||||||||||||    
T  37054288 tatatatattatgcattgtccctaccaactgagctaaa 37054325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 39610363 - 39610408
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    |||||||||||||||||| || ||||||||||||  ||||||||||    
T  39610363 atatattatgcattgtccatatcaactgagctaagctcacgagaac 39610408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 4262558 - 4262606
Alignment:
Q  152 tatatatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    ||||| |||||| |||||| |||| ||||||||||||| ||||||||||    
T  4262558 tatatgtattatacattgttcttatcaactgagctaaattcacgagaac 4262606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 42208491 - 42208531
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacg 195  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  42208491 atatattatgcattgtccttaccaactgagctaaattcacg 42208531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 1244726 - 1244760
Alignment:
Q  154 tatatattatgcattgtccttaacaactgagctaa 188  Q
    |||||||||||||||||||||| ||||||||||||    
T  1244726 tatatattatgcattgtccttaccaactgagctaa 1244760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 8717497 - 8717539
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  8717497 atatattatgcattgtccataccaactgagctaaactcacgag 8717539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 17704052 - 17704010
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  17704052 atatattatgcattgtccttaccaactgagctaagctcacgag 17704010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 8910003 - 8910036
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  8910003 atatattatgcattgtccttaccaactgagctaa 8910036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 19488340 - 19488307
Alignment:
Q  154 tatatattatgcattgtccttaacaactgagcta 187  Q
    |||||||||||||||||||||| |||||||||||    
T  19488340 tatatattatgcattgtccttaccaactgagcta 19488307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 19778104 - 19778071
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  19778104 atatattatgcattgtccttaccaactgagctaa 19778071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 30623332 - 30623299
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  30623332 atatattatgcattgtccttaccaactgagctaa 30623299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 35372123 - 35372160
Alignment:
Q  158 tattatgcattgtccttaacaactgagctaaaatcacg 195  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  35372123 tattatgcattgtccttatcaactgagctaaactcacg 35372160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 37750021 - 37750066
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    |||||||||||||||| | || ||||||||||||| ||||||||||    
T  37750021 atatattatgcattgttcatatcaactgagctaaactcacgagaac 37750066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 41162662 - 41162703
Alignment:
Q  157 atattatgcattgtccttaacaactgagctaaaatcacgaga 198  Q
    ||||||||||||||||||| ||||||||||||  ||||||||    
T  41162662 atattatgcattgtccttatcaactgagctaatctcacgaga 41162703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 5179833 - 5179801
Alignment:
Q  154 tatatattatgcattgtccttaacaactgagct 186  Q
    |||||||||||||||||||||| ||||||||||    
T  5179833 tatatattatgcattgtccttaccaactgagct 5179801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 19701366 - 19701410
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaa 199  Q
    |||||||||||||| |||||| |||||||| |||| |||||||||    
T  19701366 atatattatgcattatccttatcaactgagttaaactcacgagaa 19701410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2055 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold2055
Description:

Target: scaffold2055; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 1090 - 1043
Alignment:
Q  141 cccgtaccttatatatatattatgcattgtccttaacaactgagctaa 188  Q
    |||| ||||| ||||||||||||| |||||||||| ||||||||||||    
T  1090 cccggaccttttatatatattatgtattgtccttaccaactgagctaa 1043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 17768 - 17726
Alignment:
Q  158 tattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    ||||||||||||||| || ||||||||||||| ||||||||||    
T  17768 tattatgcattgtccataccaactgagctaaactcacgagaac 17726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 1149091 - 1149133
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  1149091 atatattatgcattgtccttaccaactgagctaagctcacgag 1149133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 4216421 - 4216463
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  4216421 atatattatgcattgtccttatcaactgagctaagttcacgag 4216463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 13992711 - 13992677
Alignment:
Q  154 tatatattatgcattgtccttaacaactgagctaa 188  Q
    |||||||||||||||||||||| ||||||||||||    
T  13992711 tatatattatgcattgtccttaccaactgagctaa 13992677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 16980376 - 16980418
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  16980376 atatattatgcattgtccttaccaactgagctaagctcacgag 16980418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 21331439 - 21331481
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    |||||||||||||||||| |||||||||||||||  |||||||    
T  21331439 atatattatgcattgtccataacaactgagctaagctcacgag 21331481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 47099392 - 47099350
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||| |||| |||||||||||| |||||||    
T  47099392 atatattatgcattgtcgttaataactgagctaaactcacgag 47099350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 52904165 - 52904207
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgag 197  Q
    ||||||||||||||||||||| ||||||||||||  |||||||    
T  52904165 atatattatgcattgtccttaccaactgagctaacctcacgag 52904207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 54230121 - 54230155
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaa 189  Q
    ||||||||||||||||||||| |||||||||||||    
T  54230121 atatattatgcattgtccttaccaactgagctaaa 54230155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 2151104 - 2151067
Alignment:
Q  150 tatatatatattatgcattgtccttaacaactgagcta 187  Q
    ||||||||||||||||||||||| || |||||||||||    
T  2151104 tatatatatattatgcattgtccctaccaactgagcta 2151067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 3755378 - 3755333
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    |||||||||||||||||| || |||| |||||||| ||||||||||    
T  3755378 atatattatgcattgtccctaccaaccgagctaaactcacgagaac 3755333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 5117247 - 5117202
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacgagaac 200  Q
    |||||||||| |||||||||| ||||||||||||  ||||||||||    
T  5117247 atatattatgtattgtccttatcaactgagctaagctcacgagaac 5117202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 8113584 - 8113617
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  8113584 atatattatgcattgtccttaccaactgagctaa 8113617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 10926508 - 10926475
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  10926508 atatattatgcattgtccttaccaactgagctaa 10926475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 30200865 - 30200832
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  30200865 atatattatgcattgtccttagcaactgagctaa 30200832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 35191839 - 35191872
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  35191839 atatattatgcattgtccttaccaactgagctaa 35191872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 39822193 - 39822226
Alignment:
Q  154 tatatattatgcattgtccttaacaactgagcta 187  Q
    |||||||||||||||||||||| |||||||||||    
T  39822193 tatatattatgcattgtccttaccaactgagcta 39822226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 45096065 - 45096032
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  45096065 atatattatgcattgtccttatcaactgagctaa 45096032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 45254270 - 45254237
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  45254270 atatattatgcattgtccttaccaactgagctaa 45254237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 46469316 - 46469283
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  46469316 atatattatgcattgtccttaccaactgagctaa 46469283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 52119415 - 52119382
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    ||||||||||||||||||||| ||||||||||||    
T  52119415 atatattatgcattgtccttaccaactgagctaa 52119382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 55198918 - 55198882
Alignment:
Q  158 tattatgcattgtccttaacaactgagctaaaatcac 194  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  55198918 tattatgcattgtccttaccaactgagctaaactcac 55198882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 1276 - 1239
Alignment:
Q  152 tatatatattatgcattgtccttaacaactgagctaaa 189  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  1276 tatatagattatgcattgtccttaacaactgagttaaa 1239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 91584 - 91617
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaa 188  Q
    |||||||||||||| |||||||||||||||||||    
T  91584 atatattatgcattatccttaacaactgagctaa 91617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 10779 - 10819
Alignment:
Q  155 atatattatgcattgtccttaacaactgagctaaaatcacg 195  Q
    |||| |||||||||||||||| ||||||||||||| |||||    
T  10779 atattttatgcattgtccttaccaactgagctaaactcacg 10819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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