View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4956_high_5 (Length: 350)
Name: NF4956_high_5
Description: NF4956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4956_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 56 - 315
Target Start/End: Complemental strand, 49389438 - 49389179
Alignment:
| Q |
56 |
ttgcatataccatgattctgtcaaatccagtgtgcatgcaatattctcacatccgattattccttgttctaagtatagaaacctacatattgtctttcta |
155 |
Q |
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| T |
49389438 |
ttgcatataccatgattctgtcaaatccagtgtgcatgcaatattctcacatccgattattccttgttctaagtatagaaacctacatattgtctttcta |
49389339 |
T |
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| Q |
156 |
agcttttatgagctgaatcaaacttgtgcattctttaatttgttaaggtgtttatggctgatagctaggaacatttgaatttgtcatcaaccatctaggg |
255 |
Q |
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| T |
49389338 |
agcttttatgagctgaatcaaacttgtgcattctttaatttgttaaggtgtttatggctgatagctaggaacatttgaatttgtcatcaaccatctaggg |
49389239 |
T |
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| Q |
256 |
caagataggaaaagacaaaataataacagttcaaaaacaggacacaatgaaataggtcag |
315 |
Q |
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| T |
49389238 |
caagataggaaaagacaaaataataacagttcaaaaacaggacacaatgaaataggtcag |
49389179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 49390075 - 49390021
Alignment:
| Q |
5 |
atactatgattttgatgaagtttcaatgtgtataacttgccaaaattatggttgc |
59 |
Q |
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| T |
49390075 |
atactatggttttgatgaagtttcaatgtgtataacttgccaaaattatggttgc |
49390021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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