View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4957-Insertion-11 (Length: 484)

Name: NF4957-Insertion-11
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4957-Insertion-11
NF4957-Insertion-11
[»] chr1 (1 HSPs)
chr1 (8-484)||(11757737-11758207)


Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Original strand, 11757737 - 11758207
Alignment:
Q  8 tcatcagcaagaagctccggtcgaagattcctcgccggagacgacgtcagatctcacctgtgctacttgtttctccgagattcaaagcttctcgtgagaa 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11757737 tcatcagcaagaagctccggtcgaagattcctcgccggaaacgacgtcagatctcaccggtgctacttgtttctccgagattcaaagcttctcgtgagaa 11757836  T
Q  108 tctcggtttttctgttggttcagttgattcgagttcgagttctggttcggatttcgccggaggtgaagtttcgtgtgattcgagtagaatctctgctgtt 207  Q
    || ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11757837 tcgcggtttttctgttggttcagttgattcg------agttctggttcggatttcgccggaggtgaagtttcgtgtgattcgagtagaatctctgctgtt 11757930  T
Q  208 aaaggaagaacgaactcgagaagtgaaatttcgagtggtgttgaatgtgttcgtagatttgagaagaggagtgagaatgaagttgaagtttcggagactt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11757931 aaaggaagaacgaactcgagaagtgaaatttcgagtggtgttgaatgtgttcgtagatttgagaagaggaatgagaatgaagttgaagtttcggagactt 11758030  T
Q  308 cgtgtgtggattctagttctggagttcgtagaaacttgattttgaagtttgaaaatggaaaggagaacgatgaagtttcagaagtttgtacgaaatcgga 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  11758031 cgtgtgtggattctagttctggagttcgtagaaacttgattttgaagtttgaaaatggaaaagagaacgatgaagtttctgaagtttgtacgaaatcgga 11758130  T
Q  408 acttacttttgctgagaattcaaaatcgagtaacggaaattcgaatttgaatttgaatttgaatatctcgtcggaga 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11758131 acttacttttgctgagaattcaaaatcgagtaacggaaattcgaatttgaatttgaatttgaatatctcgtcggaga 11758207  T

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