View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4957-Insertion-14 (Length: 358)

Name: NF4957-Insertion-14
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4957-Insertion-14
NF4957-Insertion-14
[»] scaffold0097 (1 HSPs)
scaffold0097 (8-347)||(16359-16698)
[»] chr2 (10 HSPs)
chr2 (8-347)||(20712520-20712859)
chr2 (202-311)||(20980542-20980651)
chr2 (221-338)||(20975515-20975632)
chr2 (212-336)||(21021267-21021392)
chr2 (221-318)||(25377031-25377128)
chr2 (213-319)||(25698456-25698562)
chr2 (264-311)||(18908832-18908879)
chr2 (264-311)||(18913580-18913627)
chr2 (264-311)||(18920788-18920835)
chr2 (217-247)||(1826329-1826359)
[»] chr8 (1 HSPs)
chr8 (266-319)||(29390288-29390341)
[»] chr7 (2 HSPs)
chr7 (264-311)||(19344598-19344645)
chr7 (264-313)||(36260253-36260302)
[»] chr6 (2 HSPs)
chr6 (114-176)||(6921508-6921570)
chr6 (116-178)||(20770502-20770564)
[»] chr4 (1 HSPs)
chr4 (264-313)||(35767018-35767067)


Alignment Details
Target: scaffold0097 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 16698 - 16359
Alignment:
Q  8 catttgtggtatgtcggtcggaactgtggtgtctatttcaataacagtctcaactggtttgcctttcaaaataatgtttgtttgaatcatcatttagagt 107  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |||    
T  16698 cattggtggtatgtcggttggaactgtggtgtctatttcaataacagtctcaactggtttgcctatcaaaacaatgtttgttggaatcatcatttacagt 16599  T
Q  108 ttattaaacaatttgtgatcatctccctcgatttggagatggagacatacacacaaatgttgctccctcaagattttgacgaagtgcatccacatatgcc 207  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  16598 ttattgaacaatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctcaggatttcgacgaagtgcatccacatatgcc 16499  T
Q  208 aatggtttgtgtgttgatggactgtctttgtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaagaatct 307  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16498 aatggtttgtgtgttgatggactgtctttgtttttctcaccattcggacggatacaattttgttatatggaagatgagggaatttgcagttgaagagtct 16399  T
Q  308 tggattaaattgctaaagtttagctatcaacttgactttt 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16398 tggattaaattgctaaagtttagctatcaacttgactttt 16359  T

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Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 20712859 - 20712520
Alignment:
Q  8 catttgtggtatgtcggtcggaactgtggtgtctatttcaataacagtctcaactggtttgcctttcaaaataatgtttgtttgaatcatcatttagagt 107  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |||    
T  20712859 cattggtggtatgtcggttggaactgtggtgtctatttcaataacagtctcaactggtttgcctatcaaaacaatgtttgttggaatcatcatttacagt 20712760  T
Q  108 ttattaaacaatttgtgatcatctccctcgatttggagatggagacatacacacaaatgttgctccctcaagattttgacgaagtgcatccacatatgcc 207  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  20712759 ttattgaacaatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctcaggatttcgacgaagtgcatccacatatgcc 20712660  T
Q  208 aatggtttgtgtgttgatggactgtctttgtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaagaatct 307  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20712659 aatggtttgtgtgttgatggactgtctttgtttttctcaccattcggacggatacaattttgttatatggaagatgagggaatttgcagttgaagagtct 20712560  T
Q  308 tggattaaattgctaaagtttagctatcaacttgactttt 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20712559 tggattaaattgctaaagtttagctatcaacttgactttt 20712520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 20980542 - 20980651
Alignment:
Q  202 tatgccaatggtttgtgtgttgatggactgtctttgtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaa 301  Q
    ||||||||| |||| |||||||||||| ||||||||||||| |||||||||  ||| | |  |||||||||||||||| ||||  ||||||  |||||||    
T  20980542 tatgccaattgtttctgtgttgatggattgtctttgtttttgtcattattccaacggaaatgattttgttatatggaaaatgacagaatttagagttgaa 20980641  T
Q  302 gaatcttgga 311  Q
    || |||||||    
T  20980642 gagtcttgga 20980651  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 221 - 338
Target Start/End: Original strand, 20975515 - 20975632
Alignment:
Q  221 ttgatggactgtctttgtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaagaatcttggattaaattgc 320  Q
    |||||| |||||||||||||| | ||||||||  | | | |  |||||||||||||| | ||||||||||||| ||||||||| ||||||||| |||||     
T  20975515 ttgatgaactgtctttgttttacacattattccaagggaaatcattttgttatatggcaaatgagggaatttggagttgaagattcttggattcaattgt 20975614  T
Q  321 taaagtttagctatcaac 338  Q
    | || ||||| |||||||    
T  20975615 ttaaatttaggtatcaac 20975632  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 336
Target Start/End: Complemental strand, 21021392 - 21021267
Alignment:
Q  212 gtttgtgtgttgatggactgtcttt-gtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaagaatcttgg 310  Q
    ||||| ||||||||||| ||||||| ||||| || |||||||  | ||||| ||||||  ||||||| |||||| |||||||  ||||||| | || |||    
T  21021392 gtttgcgtgttgatggaatgtcttttgttttacttattattcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagtcatgg 21021293  T
Q  311 attaaattgctaaagtttagctatca 336  Q
    | ||||||||| ||||||||||||||    
T  21021292 actaaattgcttaagtttagctatca 21021267  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 25377031 - 25377128
Alignment:
Q  221 ttgatggactgtctttgtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaagaatcttggattaaatt 318  Q
    |||| ||||||||||||||||| |||| ||| ||| ||| || ||||||||||||||| ||||| ||| |||| |||| |||| ||||||||| ||||    
T  25377031 ttgacggactgtctttgtttttgtcatgatttggaggaaaaccattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaatt 25377128  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 25698456 - 25698562
Alignment:
Q  213 tttgtgtgttgatggactgtctttgtttttctcattattcggacgaatacaattttgttatatggaagatgagggaatttgcagttgaagaatcttggat 312  Q
    |||| ||||||||||  |||||||||||||||||||| ||      ||  ||||||||||||||| | ||||| ||||||| ||||||||| |||||||     
T  25698456 tttgcgtgttgatgggatgtctttgtttttctcattactcaaggttatctaattttgttatatggcaaatgagagaatttggagttgaagactcttggac 25698555  T
Q  313 taaattg 319  Q
    |||||||    
T  25698556 taaattg 25698562  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 18908879 - 18908832
Alignment:
Q  264 attttgttatatggaagatgagggaatttgcagttgaagaatcttgga 311  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||||    
T  18908879 attttgttatatggaagatgatggaatttggagttcaagagtcttgga 18908832  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 18913627 - 18913580
Alignment:
Q  264 attttgttatatggaagatgagggaatttgcagttgaagaatcttgga 311  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||||    
T  18913627 attttgttatatggaagatgatggaatttggagttcaagagtcttgga 18913580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 18920835 - 18920788
Alignment:
Q  264 attttgttatatggaagatgagggaatttgcagttgaagaatcttgga 311  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||||    
T  18920835 attttgttatatggaagatgatggaatttggagttcaagagtcttgga 18920788  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 1826329 - 1826359
Alignment:
Q  217 tgtgttgatggactgtctttgtttttctcat 247  Q
    |||||||||||||||||||||||||||||||    
T  1826329 tgtgttgatggactgtctttgtttttctcat 1826359  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 29390288 - 29390341
Alignment:
Q  266 tttgttatatggaagatgagggaatttgcagttgaagaatcttggattaaattg 319  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| | |||||||    
T  29390288 tttgttatatggcagatgagggaatttggagttgaagaatcttgaactaaattg 29390341  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 19344645 - 19344598
Alignment:
Q  264 attttgttatatggaagatgagggaatttgcagttgaagaatcttgga 311  Q
    |||||||||||||| |||||| |||||||| ||||||| |||||||||    
T  19344645 attttgttatatggcagatgatggaatttggagttgaacaatcttgga 19344598  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 36260253 - 36260302
Alignment:
Q  264 attttgttatatggaagatgagggaatttgcagttgaagaatcttggatt 313  Q
    ||||||||||||||||||||   ||||||| ||||||||| |||||||||    
T  36260253 attttgttatatggaagatggaagaatttggagttgaagagtcttggatt 36260302  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 6921570 - 6921508
Alignment:
Q  114 aacaatttgtgatcatctccctcgatttggagatggagacatacacacaaatgttgctccctc 176  Q
    ||||||||||||| ||||| || ||||||| ||  |||||||| |||||| ||||||||||||    
T  6921570 aacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctc 6921508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 20770502 - 20770564
Alignment:
Q  116 caatttgtgatcatctccctcgatttggagatggagacatacacacaaatgttgctccctcaa 178  Q
    |||||||||||||||||||| ||||||| ||  |||||||||| |||  |||| |||||||||    
T  20770502 caatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaa 20770564  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 35767018 - 35767067
Alignment:
Q  264 attttgttatatggaagatgagggaatttgcagttgaagaatcttggatt 313  Q
    ||||||||||||||||||||   ||||||| ||||||||| |||||||||    
T  35767018 attttgttatatggaagatggaagaatttggagttgaagagtcttggatt 35767067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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