View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4957-Insertion-15 (Length: 195)
Name: NF4957-Insertion-15
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4957-Insertion-15 |
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| [»] chr3 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 1606321 - 1606133
Alignment:
| Q |
7 |
aattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgagaact |
106 |
Q |
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| T |
1606321 |
aattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaact |
1606222 |
T |
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| Q |
107 |
ttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatga |
195 |
Q |
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| T |
1606221 |
ttcatggacactttagtaagccccctgggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatga |
1606133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 1629619 - 1629431
Alignment:
| Q |
7 |
aattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgagaact |
106 |
Q |
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| T |
1629619 |
aattagggctgcatcagatctaaaacctgttgttgacaagtacaaaaccttcttgggcagaccttggcaacaatattcaagagtaatggtgatgaaaact |
1629520 |
T |
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| Q |
107 |
ttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatga |
195 |
Q |
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| T |
1629519 |
tttatggacactttagtgagccccctaggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatga |
1629431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 10821079 - 10821267
Alignment:
| Q |
7 |
aattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgagaact |
106 |
Q |
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| T |
10821079 |
aattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttaggaagaccttggcaacaatattcaagagttatggtgatgaaaact |
10821178 |
T |
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| Q |
107 |
ttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatga |
195 |
Q |
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| T |
10821179 |
tttatggacactttagtcagccccctaggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatga |
10821267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 149; E-Value: 6e-79
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 1623443 - 1623255
Alignment:
| Q |
7 |
aattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgagaact |
106 |
Q |
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| T |
1623443 |
aattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggccttggcaacaattctcaagagttatggtgatgaaaact |
1623344 |
T |
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| Q |
107 |
ttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatga |
195 |
Q |
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| T |
1623343 |
tttatggacactttagtgagccccctaggttggtctccatggggtgacacagattttgctcaagatacattgtattatggagagtatga |
1623255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 18781137 - 18780949
Alignment:
| Q |
7 |
aattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgagaact |
106 |
Q |
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| T |
18781137 |
aattatggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaact |
18781038 |
T |
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| Q |
107 |
ttcatggacactttagtgagcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatga |
195 |
Q |
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| T |
18781037 |
tttatggacactttagtgagccccctaggttggtctccatggggtgacactgattttgctcaagacacattgtattatggcgagtatga |
18780949 |
T |
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