View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4957-Insertion-2 (Length: 1014)
Name: NF4957-Insertion-2
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4957-Insertion-2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 289 - 787
Target Start/End: Original strand, 30419555 - 30420041
Alignment:
| Q |
289 |
caacactcttttctacattttccaaatctttagataccattctcaacctccttaatcgcatcattccttcccaattgccatataacaacaatgagtttct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30419555 |
caacactcttttctacattttccaaatctttagataccattctcaacctccttaatcgcatcattccttcccagttgccatataacaacaatgagtttct |
30419654 |
T |
|
| Q |
389 |
tctattaaatatatttgaatctcattccaaaagttcgccacttggatatgaggggatgcactggtttttaaatttccacccaataatatgtgttgtttat |
488 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30419655 |
tctaataaatatatttgaat-------------ttcgccacttgtgtgtgaggggatgcactgatttttaaatttccacccaataatatgggttgtttat |
30419741 |
T |
|
| Q |
489 |
acgtttgcacatcctaaaattgtattcatgcacctcctaaaactctcacatcaaactttgttgacacactctattttttaggtcttaaccattgatgatg |
588 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30419742 |
acgtttgcacatcctgaaattgtattcatgcacctcctaagactctcacatcaaactttgttgacacactctattttttaggtcttaaccattgatgatg |
30419841 |
T |
|
| Q |
589 |
ttgttatagatgacggtcatactttgttgcttttacatgttgactttgnnnnnnnnatttaatatttg--taatttgtaatgcaactacannnnnnnaat |
686 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | ||| |
|
|
| T |
30419842 |
ttgttatagatggcagtcatactttgttgcttttacatgttgactttgttatttttatttaatatttgtataatttgtaatgcaactatatttttttaat |
30419941 |
T |
|
| Q |
687 |
taatataggtaattggtgtttcgttgtgaag-ttttttcttcttcaacaaaacgtaaaaaagaacccaggaaattaaactagactcgaataaccactact |
785 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30419942 |
taatataggtaattggtgtttcattgtgaagttttttttttcttcaacaaaacgt-aaaaagaacccaggaaatt-aactagactcgaataaccactact |
30420039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 30419272 - 30419486
Alignment:
| Q |
7 |
atatcacttggttcacagaaaagattaaacatatatatttt-ttaatcgaatatcacttggttcataaaaagtttataataataatttgagttggagtta |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
30419272 |
atatcacttggttcatagaaaagattaaacatatatttttttttaatcgaatatcacttggttcataaaaaatttataataataatttgagttggggtta |
30419371 |
T |
|
| Q |
106 |
gataactcaactgctttgagctaaaaattaaatagttgaaattcacgaggttcaaattcatatgaatggataaatattaatttaacaattaattattagt |
205 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30419372 |
gataactcaagtgctttgagctaaaagttaaatagttgaaattcacgaggttcaaattcatatgaatggataaatattaatttaacaaataattattagt |
30419471 |
T |
|
| Q |
206 |
atttatcaagttttt |
220 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30419472 |
atttatcaagttttt |
30419486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 835 - 1004
Target Start/End: Original strand, 30420088 - 30420268
Alignment:
| Q |
835 |
tcatcacaaattacttggtcgaaacacttagtgacaaaattaaagagggatttcctg-tttctcactctaa--tttcctcactagttttgg--ttttagt |
929 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||| |||||| ||||| ||||| || ||||||||||||| ||| ||||||| |||| | ||||||| |
|
|
| T |
30420088 |
tcattacaaattacttggtcgaagcatttagtgacgaaattagagaggaatttcatgttttctcactctaaatttttctcactaatttttgttttttagt |
30420187 |
T |
|
| Q |
930 |
agtgaacttatttgt-atcctt-agtaattaa-taagcc-cattaacatttaaatgcgtgt--aattccatcctataaatt |
1004 |
Q |
| |
|
|||||||||||||| |||||| | ||||||| |||||| ||||| ||||||| ||| ||| ||||| |||||||||||| |
|
|
| T |
30420188 |
ggtgaacttatttgtaatccttaattaattaattaagccacattaccatttaactgcttgttaaattcaatcctataaatt |
30420268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 838 - 887
Target Start/End: Complemental strand, 9177181 - 9177132
Alignment:
| Q |
838 |
tcacaaattacttggtcgaaacacttagtgacaaaattaaagagggattt |
887 |
Q |
| |
|
||||||||| |||||||| || | |||||||| ||||||||||||||||| |
|
|
| T |
9177181 |
tcacaaatttcttggtcgcaaaatttagtgacgaaattaaagagggattt |
9177132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University