View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4957-Insertion-4 (Length: 817)
Name: NF4957-Insertion-4
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4957-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 524
Target Start/End: Original strand, 3700900 - 3701425
Alignment:
| Q |
11 |
ataataacctaagagcaactttaacggacgatatcatcatccatttttatgatttttactaaagtttgcggtttgagagatctccggcacaacaatnnnn |
110 |
Q |
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| T |
3700900 |
ataataacctaagagcaactttaacggacaatgtcatcatccatttt-atggtttttattaaagtttgctgtttgagagatctccgacacaacagtaaaa |
3700998 |
T |
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| Q |
111 |
nnntgtattatatatgcataaatgagttaaattgttgaaattcaatgtgagtttcttaatattgtccattggagtnnnnnnnnnnnnnnngaatgaatta |
210 |
Q |
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| T |
3700999 |
aaatgtattatatatgcgtaaatgagttaaattgttgaaattcaatgtgagtttcttaatattgtccattggagtaaaaaaaaaaa----gaatgaatta |
3701094 |
T |
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| Q |
211 |
ttttatgatatggctcaatgagatacaaaataatctttaaagaagatcaccattgtagttgctctaaaga-----------------gtccgtaaattct |
293 |
Q |
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| T |
3701095 |
ttttatgatatggctcaatgagatacaaaataatctttaaagaagatcaccattgtagttgctctaaagactaaaatagaatctattgtccgtaaattct |
3701194 |
T |
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| Q |
294 |
tcacctaaaatattctaacttaactctttgacataaactcgagcacttcaatgagatgttaaaagatatctttcaacttaatcaaagtatgtcctcgaat |
393 |
Q |
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| T |
3701195 |
tcacctaaaatattctaacttaactctttgacataaactcgggcactacaatgagatgttaaaagatatctttcaacttaatcaaagtatgtcctcgaat |
3701294 |
T |
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| Q |
394 |
ccaactcaaaaatgcaatattgttaaatctctgagagctatgtcataacaaaaactttgtattgaaaaatgacatgtcttctcggatatttttccaaatt |
493 |
Q |
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| T |
3701295 |
ccaactctaaaatgcaacattgttaaatctctgacagctatgtcataacaaaaaccttcttttggaaaatgacatgtcttctcggagagtcttccaaatt |
3701394 |
T |
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| Q |
494 |
tccaatgcactctatccggaacaccaaatga |
524 |
Q |
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| T |
3701395 |
tccaatgcactctatccggaacaccaaatga |
3701425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 567 - 817
Target Start/End: Original strand, 3700435 - 3700686
Alignment:
| Q |
567 |
gtaatctaaagtctatacaaatgatgctaaatggttttgatggcatacttaatttctattgtaactgaagagcttttcattttaatcacttcattccttt |
666 |
Q |
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| T |
3700435 |
gtaatctaaagtctatacaaatgatgctaaatggttttgatgacatgcttaatttctattgtaactgaagagcttttcattttaatcacttcattccttt |
3700534 |
T |
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| Q |
667 |
agatgcaactatttgcttgttgggagtagcatttgaggtccccaagcttttattttgagtattcatttaattattctgtgaatacaaagctactacaact |
766 |
Q |
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| T |
3700535 |
agatgcaactatttgcttgttgggagtagcatttgaggtccccaagtttttattttgagtattcatttaattattctgtgaattcaaagctactacaaca |
3700634 |
T |
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| Q |
767 |
g-aattgtggacaaacacttgagttataatccattatcacctttatatgcag |
817 |
Q |
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| T |
3700635 |
gaaattgtggacaaacacttgagttataatccattatcaactttatatgcag |
3700686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 516 - 567
Target Start/End: Original strand, 3701474 - 3701525
Alignment:
| Q |
516 |
accaaatgagctgttgaaattggcaaaataatctccaagaaaatcatttggg |
567 |
Q |
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| T |
3701474 |
accatatgagctgttgaaattggcaaaataatctccaagaaaatcatttggg |
3701525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 3715080 - 3715125
Alignment:
| Q |
235 |
acaaaataatctttaaagaagatcaccattgtagttgctctaaaga |
280 |
Q |
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| T |
3715080 |
acaaaataatctttaaagaagatcaccattgaagttgctctaaaga |
3715125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 793
Target Start/End: Original strand, 3714745 - 3714817
Alignment:
| Q |
719 |
ttttgagtattcatttaattattctgtgaatacaaagctactacaactgaa-ttgtggacaaacacttgagttata |
793 |
Q |
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| T |
3714745 |
ttttaagtattcatttaattattc---gaatacatagcttgtacaactgaaattatggacaaacacttgagttata |
3714817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 3715143 - 3715184
Alignment:
| Q |
281 |
gtccgtaaattcttcacctaaaatattctaacttaactcttt |
322 |
Q |
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| T |
3715143 |
gtccgtaaattcttaacctaaaatattctaagttaactcttt |
3715184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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