View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4957-Insertion-5 (Length: 829)

Name: NF4957-Insertion-5
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4957-Insertion-5
NF4957-Insertion-5
[»] chr1 (1 HSPs)
chr1 (8-829)||(35690376-35691203)


Alignment Details
Target: chr1 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 8 - 829
Target Start/End: Original strand, 35690376 - 35691203
Alignment:
Q  8 agaaactccaatttcaagaggcaaaatcctcgattcttctcggaagcaacaaaacatgccagagctccataatcaattttgacctctttatgagtggaac 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  35690376 agaaactccaatttcaagaggcaaaatcatcgattcttctcggaagcaacaaaacatgtcagagctccagaatcaattttgacctctttatgagtggaac 35690475  T
Q  108 c-aaaagtaatgtgatgagattgggaaaatttaaaaagtggcggcagagaagaagacttacagtgaaacctnnnnnnn-gtaaccttccaatgattaggg 205  Q
    | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  35690476 ccaaaagtaatgtgatgagattggggaaatttaacaagtggcggcagagaagaagacttacagtgaaacctaaaaaaaagtaaccttccaatgattaggg 35690575  T
Q  206 attcaatcaacaaacggaaacaaaaccaccaccatcactttctgacattgaactcaatcctacacaaaggaaaaacgtacagttttattaattacataat 305  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35690576 attcaatcaacaaacggagacaaaaccaccaccatcactttctgacattgaactcaatcctacacaaaggaaaaacgtacagttttattaattacataat 35690675  T
Q  306 ttattgaaatnnnnnnngaatttttgacactgtcttcaatactaaacccttccatgcaagggtttccttaatcgttaagtagaacaaaatagaaatagaa 405  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35690676 ttattgaaataaaaaaagaatttttgacactgtcttcaatactaaacccttccatgcaagggtttccttaatcgttaagtagaacaaaatagaaatagaa 35690775  T
Q  406 acaacaaaaatgtaaaaagtgtgaatgcaatgcagaagaaactttcgtaactgttttggagaacggtgcggtaaagttgcaatgtaccgatgaaaaaatg 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35690776 acaacaaaaatgtaaaaagtgtgaatgcaatgcagaagaaactttcgtaactgtgttggagaacggtgcggtaaagttgcaatgtaccgatgaaaaaatg 35690875  T
Q  506 ggtttttgctataaaaagcaggttcgtggctgaagcttcccttgaagaacacggaacgtaaacggaaatagtgaatttggagagagaaaagcgaaaagtg 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35690876 ggtttttgctataaaaagcaggttcgtggctgaagcttcccttgaagaacacggaacgtaaacggaaatagtgaatttggagagagaaaagcgaaaagtg 35690975  T
Q  606 gtggttatggagaagaagaaggaggtagtggtcaaaaaagtgtaaaccctgaaatgacaatgtgtaa------tttgattttgattgcactgaattttca 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||    
T  35690976 gtggttatggagaagaagaaggaggtagtggtcaaaaaagtgtaaaccctgaaatgacaatgtgtaatttgattttgattttgattgcactgaattttca 35691075  T
Q  700 cggaaaatcagagaataaaaagagtgtgttgtgtgtgagagtgtatgaatttcaggagaagttgtagagtcgcggggtgggcccagtttgttatgttgga 799  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35691076 cggaaaatcagagaat-aaaagagtgtgttgtgtgtgagagtgtataaatttcaggagaagttgtagagtcgc-gggtgggcccagtttgttatgttgga 35691173  T
Q  800 cgtgtttaaatttgttttttccatttatca 829  Q
    ||||||||||||||||||||| ||||||||    
T  35691174 cgtgtttaaatttgttttttcaatttatca 35691203  T

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