View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4957-Insertion-7 (Length: 671)
Name: NF4957-Insertion-7
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4957-Insertion-7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 31823128 - 31823468
Alignment:
| Q |
8 |
gaaactacaccaattctcaacatgtctactccagtacaagttggcacagatcatcgtctttttgtcattgctaaaaatgtgacaaaatcaacaaaagtga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31823128 |
gaaactacaccaattctcaacatgtctactccagtacaagtaggcacagatcatcgtctttttgtcattgctaaaaatgtgacaaaatcaacaaaagtga |
31823227 |
T |
|
| Q |
108 |
aagtggattttatatgcatcaccaaattatcagaatatagaaaagatgcacatacttctgtttacacaatacgtcaaggcaaagtgttaactccagagca |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31823228 |
aagtggattttatatacatcaccaaattatcagaatatagaaaagatgcacatacttctgtttacacaatacgtcaaggcaaagtgttaactccagagca |
31823327 |
T |
|
| Q |
208 |
acaagctaaccctgctacttatgcagattgtatccattggtgtttaccagggttacctgatacatggaatgagttgctttatacacgtatcgtctctctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31823328 |
acaagctaaccctgctacttatgcagattgtatccattggtgtttaccagggttacctgatacatggaatgagttgctttatacacgtatcgtctctctt |
31823427 |
T |
|
| Q |
308 |
tcttgaccaacaaggcaaccatgaatagatatactcgtgac |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31823428 |
tcttgaccaacaaggcaaccatgaatagatatattcgtgac |
31823468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 441 - 649
Target Start/End: Original strand, 31823585 - 31823787
Alignment:
| Q |
441 |
gctgagctctaaagtagagcaagcacctcaattgtacaatgaatgcagaatgcatcaaaaaagaaaataaggtaatttacacattgtaagtgactgaaca |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31823585 |
gctgagctctaaagtagagcaagcacctcaattgtacaatgaatgcagaatgcatcaaaa-agaaaataaggtaatttacacattgtaagtgactgaaca |
31823683 |
T |
|
| Q |
541 |
ttggcgcaataatatttttcttgagagcttggtttaattatgctccaaggnnnnnnnttgaggaaagggaaacaatatatattttacaacggatttggat |
640 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
31823684 |
ttggcgcaataatatttttcttaagagcttggttgaattatgctccaaggaaaaaatttgaggaaa-ggaaacaatata----ttacaacggatttggat |
31823778 |
T |
|
| Q |
641 |
catctgaag |
649 |
Q |
| |
|
|||| |||| |
|
|
| T |
31823779 |
catccgaag |
31823787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 50 - 291
Target Start/End: Original strand, 35690667 - 35690908
Alignment:
| Q |
50 |
ggcacagatcatcgtctttttgtcattgctaaaaatgtgacaaaatcaacaaaagtgaaagtggattttatatgcatcaccaaattatcagaatatagaa |
149 |
Q |
| |
|
|||||||||| ||| ||||| |||||||| || ||||| |||||||||| || ||| |||| |||| | |||||| | |||||||| ||| ||| |
|
|
| T |
35690667 |
ggcacagatcgtcgccttttcgtcattgccaacaatgtaacaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaa |
35690766 |
T |
|
| Q |
150 |
aagatgcacatacttctgtttacacaatacgtcaaggcaaagtgttaactccagagcaacaagctaaccctgctacttatgcagattgtatccattggtg |
249 |
Q |
| |
|
||||||| ||||| |||||||| || ||||||||||| || || |||| || || ||||||||| | || ||||||||||||||||||| |||||||| |
|
|
| T |
35690767 |
aagatgcgcatacctctgtttataccatacgtcaagggaagatgctaacacctgaacaacaagctgatccaactacttatgcagattgtattcattggtg |
35690866 |
T |
|
| Q |
250 |
tttaccagggttacctgatacatggaatgagttgctttatac |
291 |
Q |
| |
|
||||||||| ||||| || | ||||| ||||| |||||||| |
|
|
| T |
35690867 |
tttaccaggcttaccagacatttggaacgagttcctttatac |
35690908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University