View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4957-Insertion-8 (Length: 503)
Name: NF4957-Insertion-8
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4957-Insertion-8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 503
Target Start/End: Original strand, 12844060 - 12844550
Alignment:
| Q |
8 |
tgaaaatgatgattgagcatactttggagccagtttgttacgacggaagcagtggcggtaacggtgacttcgaagttgatttggctttcatgaatgtaga |
107 |
Q |
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| T |
12844060 |
tgaaaatgatgattgagcatactttggagccagtttgttacgacggaagctgtggcggtaacggtgacttcgaagttgatttggctttcatgaatgtaga |
12844159 |
T |
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| Q |
108 |
catggtaagtgcgaaagttttcatatctgccacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttctttggcgcgtt |
207 |
Q |
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| T |
12844160 |
catggtaagtgcgaaggttttcatatctgccacgacctagatcggtgacggtgtaagccatgagaatgacggtgtaaagatttcttttctttggcgcgtt |
12844259 |
T |
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| Q |
208 |
cgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttgtaaaacggttacaacaacc |
307 |
Q |
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| T |
12844260 |
cgttcttttctatcactgtaatc---agaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggttacaacaacc |
12844356 |
T |
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| Q |
308 |
aatttcttcgtttcagagtttccacagnnnnnnnnatttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggtttaattgtgt |
407 |
Q |
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| T |
12844357 |
aatttcttcgtttcagagtttccacag-tttttttatttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggtttaattgtct |
12844455 |
T |
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| Q |
408 |
atgannnnnnnnnnnnnnnnngttgtggcaattggctatgtttctatcactatatgttgagcatactacggttagcacgaggctataggtctttgg |
503 |
Q |
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| T |
12844456 |
atgatttttcatttttttttt-ttttggcaattggctatgtttctatcactatatgttgagcatactacggttagcacaaggctataggtctttgg |
12844550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 403
Target Start/End: Complemental strand, 12861451 - 12861065
Alignment:
| Q |
14 |
tgatgattgagcatactttggagccagtttgttacgacggaagcagtggcggtaacggtgacttcgaagttgatttggctttcatgaatgtagacatggt |
113 |
Q |
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| T |
12861451 |
tgatgatcgagcatagtacggagccagtttgttacaacggaagcagtggcggtaacggtgacttcgaagttgatttggctttcgtgaatgtagacatggt |
12861352 |
T |
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| Q |
114 |
aagtgcgaaagttttcatatctgccacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttctttggcgcgttcgttct |
213 |
Q |
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| T |
12861351 |
aagtgcgaaggttttcatatctgtcacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttctttgtcgcgttcgttct |
12861252 |
T |
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| Q |
214 |
tttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttgtaaaacggttacaacaaccaatttc |
313 |
Q |
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| T |
12861251 |
tttctatcactgtaatc---agaatgaaagaaacggttagagcaatttggaatttcccgcgccaggatttatttataaaacggttgtaacaaccaatttc |
12861155 |
T |
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| Q |
314 |
ttcgtttcagagtttccacagnnnnnnnnatttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggtttaatt |
403 |
Q |
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| T |
12861154 |
ttcgtttcagagtttccacagttttttttatttaatttatattaaaatgtaaaataaagttgcatttacttttaatattggggtttaatt |
12861065 |
T |
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