View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4957-Insertion-9 (Length: 485)

Name: NF4957-Insertion-9
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4957-Insertion-9
NF4957-Insertion-9
[»] chr7 (47 HSPs)
chr7 (238-463)||(21681249-21681476)
chr7 (241-466)||(21627746-21627972)
chr7 (356-466)||(21740671-21740781)
chr7 (242-381)||(21991458-21991596)
chr7 (337-457)||(21704307-21704426)
chr7 (238-466)||(21689035-21689256)
chr7 (80-173)||(21651991-21652084)
chr7 (239-395)||(21622745-21622893)
chr7 (8-170)||(21714108-21714270)
chr7 (238-466)||(21791645-21791866)
chr7 (242-466)||(21713825-21714048)
chr7 (62-173)||(21628047-21628158)
chr7 (62-172)||(21788152-21788262)
chr7 (80-173)||(21763987-21764077)
chr7 (248-314)||(21791512-21791578)
chr7 (80-173)||(21771883-21771976)
chr7 (80-173)||(21725818-21725911)
chr7 (238-314)||(21639468-21639544)
chr7 (238-314)||(21663875-21663951)
chr7 (239-314)||(21651859-21651934)
chr7 (248-314)||(21788002-21788068)
chr7 (238-314)||(21704425-21704499)
chr7 (80-173)||(21704565-21704658)
chr7 (392-464)||(21651734-21651806)
chr7 (8-118)||(21646720-21646830)
chr7 (397-466)||(21784566-21784635)
chr7 (406-466)||(21663698-21663758)
chr7 (398-466)||(21725571-21725639)
chr7 (62-173)||(21992092-21992206)
chr7 (114-173)||(21741028-21741087)
chr7 (401-456)||(21784691-21784746)
chr7 (80-173)||(21664017-21664113)
chr7 (398-456)||(21771645-21771703)
chr7 (80-173)||(21785325-21785421)
chr7 (8-123)||(21681622-21681737)
chr7 (410-465)||(21991408-21991463)
chr7 (8-173)||(21808226-21808394)
chr7 (277-314)||(21771759-21771796)
chr7 (277-314)||(21785163-21785200)
chr7 (80-123)||(15713595-15713638)
chr7 (414-465)||(21622693-21622744)
chr7 (403-441)||(21787911-21787949)
chr7 (277-314)||(21725694-21725731)
chr7 (380-466)||(21639321-21639404)
chr7 (8-95)||(21745532-21745619)
chr7 (432-466)||(21791419-21791453)
chr7 (277-313)||(21740895-21740931)
[»] scaffold0182 (4 HSPs)
scaffold0182 (80-173)||(25232-25325)
scaffold0182 (398-466)||(34209-34277)
scaffold0182 (115-173)||(34456-34514)
scaffold0182 (277-314)||(34332-34369)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 47)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 238 - 463
Target Start/End: Complemental strand, 21681476 - 21681249
Alignment:
Q  238 gggctcagtgtagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnn--tgttacacttcac 335  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||          | | |||||||||    
T  21681476 gggctcagggtagtgctttagtttttcatgctctcaaacctttacctaataaacaagataagtaaatatgcttgcttaaaaaaaaaatctcacacttcac 21681377  T
Q  336 tttaatatattttttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaag 435  Q
    ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||    
T  21681376 tttaatagattttttatacctgtcctctttgctactaaagcaacttgtcctcagaacaaactatataatgtctatcactttactcaatggacaagaaaag 21681277  T
Q  436 taaaattcatggaaaaaggatcattgct 463  Q
    |||||||||||||||  ||||| |||||    
T  21681276 taaaattcatggaaattggatctttgct 21681249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 241 - 466
Target Start/End: Complemental strand, 21627972 - 21627746
Alignment:
Q  241 ctcagtgtagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnn-tgttacacttca-cttt 338  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||         | |||||||||| ||||    
T  21627972 ctcagtgtagtgctttagattttcatgctctcaaacctttacctaatgagcaagataagtaaatatgcttgcttaaaacaaaatcttacacttcaacttt 21627873  T
Q  339 aatatattttttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagtaa 438  Q
    |||  |||||| ||||||||||||||   | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  21627872 aatcaattttt-atacctgtcctcttcactgctaaagtaacttgtcctcagaacaaactatataatgtccatcactttactcaacggacaagaaaagtaa 21627774  T
Q  439 aattcatggaaaaaggatcattgctttt 466  Q
    |||||||||||| |||||| ||||||||    
T  21627773 aattcatggaaataggatcgttgctttt 21627746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 356 - 466
Target Start/End: Complemental strand, 21740781 - 21740671
Alignment:
Q  356 tgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaagga 455  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21740781 tgtcctctttgttactaaagtaacttgtcctcataacaaactatataatgtccatcactttactcaatggacaagaaaagtaaaattcatggaaaaagga 21740682  T
Q  456 tcattgctttt 466  Q
    |||||||||||    
T  21740681 tcattgctttt 21740671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 242 - 381
Target Start/End: Complemental strand, 21991596 - 21991458
Alignment:
Q  242 tcagtgtagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnntgttacacttcactttaat 341  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  21991596 tcagtgtagtgctttagattttcattctctcgaacctttacctaatgaacaagataagtaaatatgcttgctt-aaaaaaatgttacacttcactttaat 21991498  T
Q  342 atattttttatacctgtcctctttgttactaaagtaactt 381  Q
    | ||||||||||| ||||||||||  ||||||||||||||    
T  21991497 agattttttatacttgtcctctttactactaaagtaactt 21991458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 337 - 457
Target Start/End: Complemental strand, 21704426 - 21704307
Alignment:
Q  337 ttaatatattttttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagt 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||||||||    
T  21704426 ttaatatattttttatacctgtcctctttgttactaaagtaacttgtcctcagaacaaa-tatataatgtccatcactttactcaatgtacaagaaaagt 21704328  T
Q  437 aaaattcatggaaaaaggatc 457  Q
    |||||||  ||||| ||||||    
T  21704327 aaaattctcggaaacaggatc 21704307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 238 - 466
Target Start/End: Complemental strand, 21689256 - 21689035
Alignment:
Q  238 gggctcagtgtagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnntgttacactt-cact 336  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        | |||||||| ||||    
T  21689256 gggctcagtgtagtgctttagattttcatgctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt----aaaatattacacttccact 21689161  T
Q  337 ttaatatattttttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagt 436  Q
    |||| ||  |||||||||||||||||||   | |||||||||||||| ||| || | |||||    | |||||  |||| |||||||||  |||||||||    
T  21689160 ttaa-atgatttttatacctgtcctcttcactgctaaagtaacttgttctcggaacgaacta---cacgtccaccacttaactcaatggggaagaaaagt 21689065  T
Q  437 aaaattcatggaaaaaggatcattgctttt 466  Q
    ||||||||||||||| ||||  ||||||||    
T  21689064 aaaattcatggaaaagggatatttgctttt 21689035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 21652084 - 21651991
Alignment:
Q  80 caccctctgtatctttggtcgtgaattttggggtgtttgctttgattgttgtagctgcacaaatttttctttaatagtttgggatgccatcatt 173  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||    
T  21652084 caccctttgtatctttggtcgtgaattttggggtgtttgctttgatttttgtagttccacaaatttttctttaatagtttgggatgccatcatt 21651991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 239 - 395
Target Start/End: Complemental strand, 21622893 - 21622745
Alignment:
Q  239 ggctcagtgtagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnntgttacacttcacttt 338  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||         |||        | | ||||||||||||    
T  21622893 ggctcagtgtagtgctttagattttcatgctctcaaacctttacctaatgaacaagataagtaa--------cctttaaaaaaatctcacacttcacttt 21622802  T
Q  339 aatatattttttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaa 395  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  21622801 aatagattttttatacctgtcctcttttttactaaagtaacttgtcctcagaacaaa 21622745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 21714270 - 21714108
Alignment:
Q  8 gataggaccaaatgacaccaacttcggaatgtaatgcacctcaaaacttgttcgatttttgagatgatctgtcaccctctgtatctttggtcgtgaattt 107  Q
    ||||||||| |||||||| ||||| ||   |||||||  ||||||| |||||| |||| ||| | | ||   |||||| |||||||| ||||||||||||    
T  21714270 gataggacctaatgacacaaacttgggtgagtaatgcttctcaaaatttgttctatttctgaaacggtcaaccaccctttgtatcttcggtcgtgaattt 21714171  T
Q  108 tggggtgtttgctttgattgttgtagctgcacaaatttttctttaatagtttgggatgccatc 170  Q
    |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  21714170 tggggtgtttgcattgatttttgtagctccacaaatttttctttaatagtttgggatgccatc 21714108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 238 - 466
Target Start/End: Complemental strand, 21791866 - 21791645
Alignment:
Q  238 gggctcagtgtagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnntgttacactt-cact 336  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||        | |||||||| ||||    
T  21791866 gggctcagtgtagtgctttagattttcatgctttcaaacctttacctactgaacaagataagtaaatatgcttgctt----aaaatattacacttccact 21791771  T
Q  337 ttaatatattttttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagt 436  Q
    ||||| |  |||||||||||||||||||   | |||||||||||||| ||| || | |||||    | |||||  | || |||||||||| |||||||||    
T  21791770 ttaat-tgatttttatacctgtcctcttcactgctaaagtaacttgttctcggaacgaacta---cacgtccaccagttaactcaatggagaagaaaagt 21791675  T
Q  437 aaaattcatggaaaaaggatcattgctttt 466  Q
    ||||||||||||||| ||||  ||||||||    
T  21791674 aaaattcatggaaaagggatatttgctttt 21791645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 242 - 466
Target Start/End: Complemental strand, 21714048 - 21713825
Alignment:
Q  242 tcagtgtagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgcttcnnnnnnntgt--tacacttc-acttt 338  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |||        | |  || | ||| |||||    
T  21714048 tcagtgtagtgctttaaattttcatgctctcaaacctttacctaatgaacaagttaagtaaatctgctttcttaaaaaaactatcttaaatttcgacttt 21713949  T
Q  339 aatatattttttatacctgtcctctttgttactaaagtaacttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagtaa 438  Q
    |||| |||||| |||| |||||||||   | |||||||||||||||||| || | ||||||||   |||||   ||||||||||||||||||||||||||    
T  21713948 aataaattttt-atacttgtcctcttcactgctaaagtaacttgtcctcggaacgaactatat---gtccaccgctttactcaatggacaagaaaagtaa 21713853  T
Q  439 aattcatggaaaaaggatcattgctttt 466  Q
    |||||||||||||| |||| ||||||||    
T  21713852 aattcatggaaaaaagatctttgctttt 21713825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 21628158 - 21628047
Alignment:
Q  62 atttttgagatgatctgtcaccctctgtatctttggtcgtgaattttggggtgtttgctttgattgttgtagctgcacaaatttttctttaatagtttgg 161  Q
    |||| |||||||||| | |||||| |||||||||||||||| |||| |||||||||||||||| | || || || |||||||||||||||||||||||||    
T  21628158 atttctgagatgatcggccaccctttgtatctttggtcgtgcatttcggggtgtttgctttgaattttttaactccacaaatttttctttaatagtttgg 21628059  T
Q  162 gatgccatcatt 173  Q
    ||||||||||||    
T  21628058 gatgccatcatt 21628047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 21788262 - 21788152
Alignment:
Q  62 atttttgagatgatctgtcaccctctgtatctttggtcgtgaattttggggtgtttgctttgattgttgtagctgcacaaatttttctttaatagtttgg 161  Q
    |||| ||||||  |||| |||||| ||||| || ||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||||||||||    
T  21788262 atttctgagatactctgccaccctttgtattttcggtcgtgaattttggggtgtttgctttgatttttgtaactccacaaatttttcattaatagtttgg 21788163  T
Q  162 gatgccatcat 172  Q
    |||||||||||    
T  21788162 gatgccatcat 21788152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 21764077 - 21763987
Alignment:
Q  80 caccctctgtatctttggtcgtgaattttggggtgtttgctttgattgttgtagctgcacaaatttttctttaatagtttgggatgccatcatt 173  Q
    |||||| |||||||| |||||||||||||||||||||||||||||   |||||||| ||||||||||||||||| |||||||||||||||||||    
T  21764077 caccctttgtatcttgggtcgtgaattttggggtgtttgctttga---ttgtagctccacaaatttttctttaagagtttgggatgccatcatt 21763987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 21791578 - 21791512
Alignment:
Q  248 tagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 314  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21791578 tagtgctttagattttcatgctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 21791512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 21771976 - 21771883
Alignment:
Q  80 caccctctgtatctttggtcgtgaattttggggtgtttgctttgattgttgtagctgcacaaatttttctttaatagtttgggatgccatcatt 173  Q
    |||||| |||||||| |||| ||||||||||||| |||||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||    
T  21771976 caccctttgtatcttcggtcttgaattttggggtatttgctttgatttttgtagttccacaaatttttctttaatagtttcggatgccatcatt 21771883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 21725911 - 21725818
Alignment:
Q  80 caccctctgtatctttggtcgtgaattttggggtgtttgctttgattgttgtagctgcacaaatttttctttaatagtttgggatgccatcatt 173  Q
    |||||| |||||||| |||| ||||||||||| | |||||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||    
T  21725911 caccctttgtatcttcggtcttgaattttgggatatttgctttgatttttgtagttccacaaatttttctttaatagtttcggatgccatcatt 21725818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 21639544 - 21639468
Alignment:
Q  238 gggctcagtgtagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 314  Q
    |||||||||||||||||||| |||||||| ||||  || ||||||||||||||||||||||||||||||||||||||    
T  21639544 gggctcagtgtagtgctttaaattttcatgctcttgaaactttacctaatgaacaagataagtaaatatgcttgctt 21639468  T

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Target: chr7; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 21663951 - 21663875
Alignment:
Q  238 gggctcagtgtagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 314  Q
    ||||||| |||| |||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21663951 gggctcactgtactgctttggattttttttctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 21663875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 21651934 - 21651859
Alignment:
Q  239 ggctcagtgtagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 314  Q
    |||||||||||||||| ||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  21651934 ggctcagtgtagtgctctagatttccatgctcacaaacctttacctaattaacaagataagtaaatatgcttgctt 21651859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 21788068 - 21788002
Alignment:
Q  248 tagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 314  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  21788068 tagtgctttagtttttcatgctctcaaacctttacctaatgaacaagataactaaatatgcttgctt 21788002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 21704499 - 21704425
Alignment:
Q  238 gggctcagtgtagtgctttagattttcattctctcaaacctttacctaatgaacaagataagtaaatatgcttgctt 314  Q
    |||||||| |||||||||||| |||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  21704499 gggctcagcgtagtgctttagtttttcattctc--aaacctttacctaatgaacaagataactaaatatgcttgctt 21704425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 21704658 - 21704565
Alignment:
Q  80 caccctctgtatctttggtcgtgaattttggggtgtttgctttgattgttgtagctgcacaaatttttctttaatagtttgggatgccatcatt 173  Q
    |||||| |||||||||||||||| |||| | |||||||||||||| | || || ||  ||||||||||||||||||||||||||||||||||||    
T  21704658 caccctttgtatctttggtcgtgcatttggaggtgtttgctttgaattttttaactcgacaaatttttctttaatagtttgggatgccatcatt 21704565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 392 - 464
Target Start/End: Complemental strand, 21651806 - 21651734
Alignment:
Q  392 caaactatataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgctt 464  Q
    |||||||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  21651806 caaactatataatgtctaccactttactcaatggacaagaaatgtaaaattcatggaaaaaggatctttgctt 21651734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 21646830 - 21646720
Alignment:
Q  8 gataggaccaaatgacaccaacttcggaatgtaatgcacctcaaaacttgttcgatttttgagatgatctgtcaccctctgtatctttggtcgtgaattt 107  Q
    ||||||||| | |||||||||||| ||  |||||||| |||||||  |||||| |||| ||||||  | || |||||| |||||||||||||||||||||    
T  21646830 gataggacctattgacaccaacttgggggtgtaatgctcctcaaattttgttctatttctgagatactgtggcaccctttgtatctttggtcgtgaattt 21646731  T
Q  108 tggggtgtttg 118  Q
    |||||||||||    
T  21646730 tggggtgtttg 21646720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 397 - 466
Target Start/End: Complemental strand, 21784635 - 21784566
Alignment:
Q  397 tatataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgctttt 466  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||  ||||||||    
T  21784635 tatataatgtccatcactttactcattggacaagaaaagtaaaattcacggaaaaaggatatttgctttt 21784566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 406 - 466
Target Start/End: Complemental strand, 21663758 - 21663698
Alignment:
Q  406 tccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgctttt 466  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21663758 tccatcactttgctcaatggacaagaaaagtaaaattcatggaaataggatcattgctttt 21663698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 21725639 - 21725571
Alignment:
Q  398 atataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgctttt 466  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||  ||||||||    
T  21725639 atataatgtccatcactttactcattggacaagaaaagtaaaattcacagaaaaaggatatttgctttt 21725571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 21992206 - 21992092
Alignment:
Q  62 atttttgagatgatctgtcaccctctgtatctttggtcgtgaattttggggtgtttgctttgattgttgtagctgcacaaatttttctttaa---tagtt 158  Q
    |||||||||||  |||| |||||| ||||||| || |||||||||||||||| |||||||||| | || ||||| ||||| |||||||| ||    ||||    
T  21992206 atttttgagatactctgccaccctttgtatctgtgttcgtgaattttggggtatttgctttgaattttctagctccacaattttttcttcaagggaagtt 21992107  T
Q  159 tgggatgccatcatt 173  Q
    |||||||||||||||    
T  21992106 tgggatgccatcatt 21992092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 21741087 - 21741028
Alignment:
Q  114 gtttgctttgattgttgtagctgcacaaatttttctttaatagtttgggatgccatcatt 173  Q
    ||||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||||||    
T  21741087 gtttgctttaatttttgtagctccacaattttttctttaatagtttgggatgccatcatt 21741028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 401 - 456
Target Start/End: Complemental strand, 21784746 - 21784691
Alignment:
Q  401 taatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggat 456  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  21784746 taatgttcatcactttactcaatggacaagaaaagtaaaattcacggaaaaaggat 21784691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 21664113 - 21664017
Alignment:
Q  80 caccctctgtatctttggtcgtgaattttggggtgtttgctttgattgttgtagctgcacaaatttttctttaa---tagtttgggatgccatcatt 173  Q
    |||||| |||||||||||||||||| |||||||| |||||||||| | || ||||| ||||| ||||| || ||   ||||||||||||||||||||    
T  21664113 caccctttgtatctttggtcgtgaactttggggtatttgctttgaattttctagctccacaatttttttttcaagggtagtttgggatgccatcatt 21664017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 398 - 456
Target Start/End: Complemental strand, 21771703 - 21771645
Alignment:
Q  398 atataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggat 456  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||    
T  21771703 atataatgtccatcactttactcattggacaagaaaagtaaaattcacagaaaaaggat 21771645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 21785421 - 21785325
Alignment:
Q  80 caccctctgtatctttggtcgtgaattttggggtgtttgctttgattgttgtagctgcacaaatttttctttaa---tagtttgggatgccatcatt 173  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| | || ||||| ||||| ||||| || ||   |||||||||||| |||||||    
T  21785421 caccctttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaatttttttttcaagggtagtttgggatgtcatcatt 21785325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 21681737 - 21681622
Alignment:
Q  8 gataggaccaaatgacaccaacttcggaatgtaatgcacctcaaaacttgttcgatttttgagatgatctgtcaccctctgtatctttggtcgtgaattt 107  Q
    ||||||||| | |||||| ||||| ||  |||||||| ||| |||  |||||| |||||||| ||    || |||||| |||||||||||||||||||||    
T  21681737 gataggacctattgacacaaacttggggctgtaatgctccttaaattttgttctatttttgacataccgtggcaccctttgtatctttggtcgtgaattt 21681638  T
Q  108 tggggtgtttgctttg 123  Q
    ||||||||||| ||||    
T  21681637 tggggtgtttgatttg 21681622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 21991463 - 21991408
Alignment:
Q  410 taactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgcttt 465  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||  |||||||    
T  21991463 taactttactcaatagacaagaaaagtgaaattcatggaaaaaggatatttgcttt 21991408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 21808226 - 21808394
Alignment:
Q  8 gataggaccaaatgacaccaacttcggaatgtaatgcacctcaaaacttgttcgatttttgagatgatctgtcaccctctgtatctttggtcgtgaattt 107  Q
    ||||||||| | ||| |||||||| ||   |||||||  ||||| | |||||| |||| ||||||  || | |||||| |||||||||||||||||||||    
T  21808226 gataggacctattgataccaacttgggtgagtaatgcttctcaagatttgttctatttctgagatactcagccaccctttgtatctttggtcgtgaattt 21808325  T
Q  108 tggggtgtttgctttgattgttgtagctgcacaaatttttctttaa---tagtttgggatgccatcatt 173  Q
    |||||| |||| ||||| | || ||||| |||||  |||| || ||   ||||||||||| ||||||||    
T  21808326 tggggtatttgatttgaattttttagctccacaatctttttttcaagggtagtttgggattccatcatt 21808394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 21771796 - 21771759
Alignment:
Q  277 ctttacctaatgaacaagataagtaaatatgcttgctt 314  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21771796 ctttacctaatgaacaagataagtaaatatgcttgctt 21771759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 21785200 - 21785163
Alignment:
Q  277 ctttacctaatgaacaagataagtaaatatgcttgctt 314  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21785200 ctttacctaatgaacaagataagtaaatatgcttgctt 21785163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 15713638 - 15713595
Alignment:
Q  80 caccctctgtatctttggtcgtgaattttggggtgtttgctttg 123  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  15713638 caccctttgtatctttggtcgtgaactttggggtgtttgctttg 15713595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 414 - 465
Target Start/End: Complemental strand, 21622744 - 21622693
Alignment:
Q  414 tttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgcttt 465  Q
    ||||||| ||||||||||||||||||||||||||||| || ||| |||||||    
T  21622744 tttactcgatggacaagaaaagtaaaattcatggaaatagtatctttgcttt 21622693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 441
Target Start/End: Complemental strand, 21787949 - 21787911
Alignment:
Q  403 atgtccataactttactcaatggacaagaaaagtaaaat 441  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  21787949 atgtccatcactttactcaatggacaagaaaagtaaaat 21787911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 21725731 - 21725694
Alignment:
Q  277 ctttacctaatgaacaagataagtaaatatgcttgctt 314  Q
    |||||||||||||||||||||||||||||||| |||||    
T  21725731 ctttacctaatgaacaagataagtaaatatgcgtgctt 21725694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 466
Target Start/End: Complemental strand, 21639404 - 21639321
Alignment:
Q  380 ttgtcctcagagcaaactatataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgctttt 466  Q
    ||||||||| | ||||||||||   |||||  ||||||||||||| |||| | |||||||||| ||| |||||||||| ||||||||    
T  21639404 ttgtcctcataacaaactatat---gtccaccactttactcaatgtacaaaataagtaaaattaatgaaaaaaggatctttgctttt 21639321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 21745619 - 21745532
Alignment:
Q  8 gataggaccaaatgacaccaacttcggaatgtaatgcacctcaaaacttgttcgatttttgagatgatctgtcaccctctgtatcttt 95  Q
    ||||||||| |||||||||||||| ||   |||||||  ||||||| |||||| |||| ||||||| |||  |||||| |||||||||    
T  21745619 gataggacctaatgacaccaacttgggtgagtaatgcttctcaaaatttgttctatttatgagatggtctaccaccctttgtatcttt 21745532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 466
Target Start/End: Complemental strand, 21791453 - 21791419
Alignment:
Q  432 aaagtaaaattcatggaaaaaggatcattgctttt 466  Q
    |||||||||||||||||||||||||| ||||||||    
T  21791453 aaagtaaaattcatggaaaaaggatctttgctttt 21791419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 21740931 - 21740895
Alignment:
Q  277 ctttacctaatgaacaagataagtaaatatgcttgct 313  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  21740931 ctttacctattgaagaagataagtaaatatgcttgct 21740895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 25325 - 25232
Alignment:
Q  80 caccctctgtatctttggtcgtgaattttggggtgtttgctttgattgttgtagctgcacaaatttttctttaatagtttgggatgccatcatt 173  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||| | ||| ||||||||||| |||||||| ||||||||||    
T  25325 caccctttgtatcttgggtggtgaattttggggtgtttgctttgatttttgtagctcctcaattttttctttaagagtttgggctgccatcatt 25232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 34277 - 34209
Alignment:
Q  398 atataatgtccataactttactcaatggacaagaaaagtaaaattcatggaaaaaggatcattgctttt 466  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||  ||||||||||  ||||||||    
T  34277 atataatgtccatcactttactcattggacaagaaaagtaaaattcacagaaaaaggatatttgctttt 34209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 34514 - 34456
Alignment:
Q  115 tttgctttgattgttgtagctgcacaaatttttctttaatagtttgggatgccatcatt 173  Q
    |||||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||    
T  34514 tttgctttgatttttgtagttccacaaatttttctttaatagtttcggatgccatcatt 34456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 34369 - 34332
Alignment:
Q  277 ctttacctaatgaacaagataagtaaatatgcttgctt 314  Q
    |||||||||||||||||||||||||||||||| |||||    
T  34369 ctttacctaatgaacaagataagtaaatatgcgtgctt 34332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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