View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4957_high_1 (Length: 748)
Name: NF4957_high_1
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4957_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 683; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 19 - 741
Target Start/End: Complemental strand, 12844064 - 12843342
Alignment:
| Q |
19 |
tttcaatccctccgccaccttcaataccttcgccgcaaccgtaatctccgtaaccgtaatctcgttgtcggccttggcgttcaatggactcccggcaacc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12844064 |
tttcaatccctccgccaccttcaataccttcgccgcaaccgtaatctctgtaaccgtaatctcattgtcggccttggcgttcaatggactcccggcaacc |
12843965 |
T |
|
| Q |
119 |
ttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| || |
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| T |
12843964 |
ttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctctctctcgccgatatgattccggttagtctctgcaactt |
12843865 |
T |
|
| Q |
219 |
tctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctggagagatttgatcatcgcttgcaaatgtggaaagatcct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843864 |
tctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctggagagatttgatcatcgcttgcaaatgtggaaagatcct |
12843765 |
T |
|
| Q |
319 |
caggatctgaggcattacaggttcaatggtgaaaatctttcacgtgaatcgatgaatgtaattgtgaggaattggcttgatttcgaagtggatcagattg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12843764 |
caggatctgaggcattacaggttcaatggtgaaaatctttcacgtgaatcgataaatgtaattgtgaggaattggcttgatttcgaagtggatcagagtg |
12843665 |
T |
|
| Q |
419 |
tacaagttggaaggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtccattgatgcttattgtgcttttagtatcggaattcg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843664 |
tacaagttggaaggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtccattgatgcttattgtgcttttagtatcggaattcg |
12843565 |
T |
|
| Q |
519 |
cgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaat |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843564 |
cgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaat |
12843465 |
T |
|
| Q |
619 |
cattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtgtttgatattagtcttgttgagt |
718 |
Q |
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| T |
12843464 |
cattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtgtttgatattagtcttgttgagt |
12843365 |
T |
|
| Q |
719 |
attgcacttattttcttcgacat |
741 |
Q |
| |
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|||||||||||||| || ||||| |
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| T |
12843364 |
attgcacttattttgtttgacat |
12843342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 64 - 659
Target Start/End: Original strand, 12861462 - 12862057
Alignment:
| Q |
64 |
ctccgtaaccgtaatctcgttgtcggccttggcgttcaatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagct |
163 |
Q |
| |
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||||| ||| ||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12861462 |
ctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgccgacacgctacagttatgcatcggtggcagct |
12861561 |
T |
|
| Q |
164 |
gtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgc |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861562 |
gtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgc |
12861661 |
T |
|
| Q |
264 |
tgatcgtagaaggctggagagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattacaggttcaatggtgaaaatctttcacgt |
363 |
Q |
| |
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|||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| |||||||||| |
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| T |
12861662 |
agatcgtaggaagctggagagatttgatcatcgcttgcaaatgtggaaaaatcctcaggatttgaggaattacgagttcaatggtgaagctctttcacgt |
12861761 |
T |
|
| Q |
364 |
gaatcgatgaatgtaattgtgaggaattggcttgatttcgaagtggatcagattgtacaagttggaaggagcaattggaatgcagagaatctttatgaag |
463 |
Q |
| |
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||||||| ||| |||||||||||| || |||| |||| |||||||||||| | | ||||||| ||||| ||||||||| |||||||||||||| | |
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| T |
12861762 |
ttatcgatggatgaaattgtgaggaaatgtcttggtttcaaagtggatcagagtattgaagttggtaggagtaattggaatcaagagaatctttatgcac |
12861861 |
T |
|
| Q |
464 |
atcaaattgcttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaa |
563 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||| ||| |||||||||| | | |||||||||||||||| ||||||| |||||||| || |||| |
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| T |
12861862 |
atcaagttgcttatgcgtccattgatgcttattttgcgtttcttatcggaatttgtttccaagcttggaggtacccttaagatcgattttactttctaaa |
12861961 |
T |
|
| Q |
564 |
tttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtta |
659 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
12861962 |
tttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcactcttatgttcgtaactcattttagagattatagtgtta |
12862057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 584 - 658
Target Start/End: Complemental strand, 13125837 - 13125763
Alignment:
| Q |
584 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt |
658 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgtt |
13125763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 682 - 730
Target Start/End: Complemental strand, 13125587 - 13125539
Alignment:
| Q |
682 |
tagaatcatatagtgtttgatattagtcttgttgagtattgcacttatt |
730 |
Q |
| |
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|||||| ||| |||||||||| ||||| ||||||||||||||||||||| |
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| T |
13125587 |
tagaataatacagtgtttgattttagtgttgttgagtattgcacttatt |
13125539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 602
Target Start/End: Complemental strand, 13125629 - 13125589
Alignment:
| Q |
562 |
aatttcaatcaagattcaagattatagtgttaatgtctact |
602 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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