View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4957_high_13 (Length: 327)
Name: NF4957_high_13
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4957_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 50 - 311
Target Start/End: Original strand, 33521157 - 33521422
Alignment:
| Q |
50 |
agggaccaaaattaaacaaaaattaattataggaaagacataaaatctcttaattagttaaaggattggttatgtaattttaaccnnnnnnnctttaa-- |
147 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | | |||||| |
|
|
| T |
33521157 |
agggaccaaaatgaagcaaaaattaattataggacagacataaaatctcttaattagttaaaggataggttatgtaatttaaccttttttttctttaatt |
33521256 |
T |
|
| Q |
148 |
--tgttctttcacgtgtttcaaatattatccttaatctttcttctctcctgtaaccaaagaaaaactttcttctctcctatttcttatttgaaaaatcct |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33521257 |
aatgttctttcacgtgtttcaaatattatccttaatctttcttctctcctgtaaccaaagaaaaactttcttctctcctatttcttatatgaaaaatcct |
33521356 |
T |
|
| Q |
246 |
atcatctatcgtttattcaacgatcttgatttcagtatctcttgtcaatagaaataatctacttcc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33521357 |
atcatctatcgtttattcaacgatcttgatttcagtatctcttgtcaatagaaataatctacttcc |
33521422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University