View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4957_high_2 (Length: 530)
Name: NF4957_high_2
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4957_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Complemental strand, 45142062 - 45141559
Alignment:
| Q |
19 |
agagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45142062 |
agagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaactttactcatctccatattcag |
45141963 |
T |
|
| Q |
119 |
tgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagtcct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45141962 |
tgctctacatgcaagaggcgtggcaacaccatacggtgagattgaattgactctaattccgtaagctccaagctcaccacacgttgaacgtacaagtcct |
45141863 |
T |
|
| Q |
219 |
aagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatttttctct |
318 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141862 |
aagagaccatgtttggatgtaacataatcatggccacgatttccagcaacagaggcagctacactggcagtacaaattatggatccacggatttttctct |
45141763 |
T |
|
| Q |
319 |
ccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattctagtatgct |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141762 |
ccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattctagtatgct |
45141663 |
T |
|
| Q |
419 |
gctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttgtttttca |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141662 |
gctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttgtttttca |
45141563 |
T |
|
| Q |
519 |
tctc |
522 |
Q |
| |
|
|||| |
|
|
| T |
45141562 |
tctc |
45141559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 23 - 520
Target Start/End: Complemental strand, 45152703 - 45152204
Alignment:
| Q |
23 |
agcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcagtgct |
122 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| | ||||||||| |
|
|
| T |
45152703 |
agcagcttctgcaatatgaccagcctttagtgtaattcctttcaaattagcagaatcattcccaatagcttcaacttcactcacatccttgttcagtgct |
45152604 |
T |
|
| Q |
123 |
ctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagtcctaaga |
222 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||| ||||||||| || ||||| |||| | |
|
|
| T |
45152603 |
ctacataaaagaggtgtggcaacaccagaaggtgaaattgaattaactcttattccataagctccaagctcactgcacgttgagcgaacaaggcctataa |
45152504 |
T |
|
| Q |
223 |
gaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatttttctctccac |
322 |
Q |
| |
|
||||||||||||| | ||||||||| || | | ||||||||| || |||| ||||| || || ||||||||||||||||| |||||||| ||||| |
|
|
| T |
45152503 |
gaccatgtttggatgttgtataatcatgtcctgcacatccagcaacaaagccagccacactagccgtgcaaattatggatccacgaatttttctttccac |
45152404 |
T |
|
| Q |
323 |
catgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattctagtatgctgcta |
422 |
Q |
| |
|
||| | ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| || |
|
|
| T |
45152403 |
cataacacgcgcagcgtgcttgatagttgtagctgatccacgaacattaatggccatggtgttgtcaaattcatttacatca----ttagtatgctgata |
45152308 |
T |
|
| Q |
423 |
gaca------taccaccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttgttttt |
516 |
Q |
| |
|
|||| || ||||| |||||||||| ||||| ||||| ||||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
45152307 |
gacatagcagtagcacctccaattccagcattgctgaacatgatgtctaaggttccatatttttccaatgcaaaagctacggtttcctcaacttgttttt |
45152208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 89 - 418
Target Start/End: Complemental strand, 38256456 - 38256127
Alignment:
| Q |
89 |
agcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctcca |
188 |
Q |
| |
|
|||||||||||||||| | |||| | ||||||||||||||||||||| || |||||| ||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
38256456 |
agcttcaacttcactcggcaccatgtccagtgctctacatgcaagaggtgtagcaacagcatagggtgagattgaattgactctgattccataagctcca |
38256357 |
T |
|
| Q |
189 |
agctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcag |
288 |
Q |
| |
|
||||||||||| | ||| | ||||| |||| ||||||||||| || | ||||||||| || | | | | ||||| | ||||||||||||| | |
|
|
| T |
38256356 |
agctcaccgcatgctgacctaacaaggcctataagaccatgttttgatgctgtataatcatgtcctgcacatctaccaacaaaaccagctacactggctg |
38256257 |
T |
|
| Q |
289 |
tacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtc |
388 |
Q |
| |
|
| |||||||| ||||| || |||||||| |||||||| | ||||| ||| |||||||||| ||| || ||||||| || | |||||||||||||| |
|
|
| T |
38256256 |
tgcaaattattgatcctcgtatttttctttccaccattacacgtgaagcatgcttgatagttgcagctgcaccacgaatgttcacagccatggtgttgtc |
38256157 |
T |
|
| Q |
389 |
aaattcattcagatcaaattctagtatgct |
418 |
Q |
| |
|
||||||||| || | ||||||||||||||| |
|
|
| T |
38256156 |
aaattcatttaggttaaattctagtatgct |
38256127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University