View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4957_high_7 (Length: 425)
Name: NF4957_high_7
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4957_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 48706266 - 48705885
Alignment:
| Q |
10 |
aagaatatgcataattttgcgaaggttcttagagaaccttgtgagagaagtaaaatgagcaaaatgttttgatatagagtctagacctgccgtgacacat |
109 |
Q |
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| T |
48706266 |
aagaatatgcataattttgcgaaggttcttagagaacct-gtgagagaagtaaaatgagcaaaatgttctgatatagagtctagacctgccgtgacacat |
48706168 |
T |
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| Q |
110 |
cctaaccaaagagagagtaaataccaaatcttcccaaaatatcgcaacgaatgaacaaatgattaacatcatcgtccctaccgcaacctcccatgcatct |
209 |
Q |
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| T |
48706167 |
cctaaccaaagagagagcaaagaccaaatcttcccaaaaaattgcaacgaacgaacaaatgattaacatcatcgtccctacctcaacctcccatgcgtct |
48706068 |
T |
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| Q |
210 |
cttgtcattattctgaatgatt-acaaatgttctaacatgatccccgcacaaatatgataccaatagcatttttcgtaatttcctttaaagtggaaggac |
308 |
Q |
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| T |
48706067 |
cttgtcattat-----atgattaacaaatgttctgacataatccccgcacaaatatgacactaatagcatttttcgtaatttcctt------------ac |
48705985 |
T |
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| Q |
309 |
aatttcgta-aaacatccatctctcttatgcttgtgtccctcgtctctcccctgtgtcttaattctgacacaaccacgacccatgtaaacctagcgaact |
407 |
Q |
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| T |
48705984 |
aatttcgtagaaacatccatctctcttatgcttgtgtccctcgtctctcccctgtgtcttaattctgacactaccacgacccatgtaaacctagcgaact |
48705885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 27163263 - 27163176
Alignment:
| Q |
30 |
gaaggttcttagagaaccttgtgagagaagtaaaatgagcaaaatgttttgatatagagtctagacctgccgtgacacatcctaaccaaa |
119 |
Q |
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| T |
27163263 |
gaagattcttagagaaacttgtgagaga--taaaatgagcaaaatgatctgatatagagcctagacttgttgtgacgcaccctaaccaaa |
27163176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 12496975 - 12496911
Alignment:
| Q |
256 |
cacaaatatgataccaatagcatttttcgtaatttcctttaaagtggaaggacaatttcgtaaaa |
320 |
Q |
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| T |
12496975 |
cacaaaaatgacaccaatgagattttttgtaatttcctttaaattgcaaggacaattttgtaaaa |
12496911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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