View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4957_low_15 (Length: 252)
Name: NF4957_low_15
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4957_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 3731770 - 3731987
Alignment:
| Q |
18 |
tcttagtgttttctcttgttctgacacatgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctca |
117 |
Q |
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| T |
3731770 |
tcttagtgttttctcttgttctgacacatgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctca |
3731869 |
T |
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| Q |
118 |
atatacacaggtctgccacatttatcaactccatggtatccatggggataacattttttcacttctgtgtattctgtgaatttgaattcctgattatgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731870 |
atatacacaggtctgccacatttatcaactccatggtatccatggggataacattttttcacttctgtgtattctgtgaatttgaattcctgattatgta |
3731969 |
T |
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| Q |
218 |
ccaaaaaatgaatgacat |
235 |
Q |
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|||||||||||||||||| |
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| T |
3731970 |
ccaaaaaatgaatgacat |
3731987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 11684088 - 11684305
Alignment:
| Q |
18 |
tcttagtgttttctcttgttctgacacatgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctca |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11684088 |
tcttagggttttctcttgttctgacacatgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaacatctatcatcccaattctctcg |
11684187 |
T |
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| Q |
118 |
atatacacaggtctgccacatttatcaactccatggtatccatggggataacattttttcacttctgtgtattctgtgaatttgaattcctgattatgta |
217 |
Q |
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|||||||||| ||||||||||||||||| |||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11684188 |
atatacacagacctgccacatttatcaaccccatggaatccatgaggatagcattttttcacttctgtgtattctggaaatttgaattcctgattatgta |
11684287 |
T |
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| Q |
218 |
ccaaaaaatgaatgacat |
235 |
Q |
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|||||||||||||||||| |
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| T |
11684288 |
ccaaaaaatgaatgacat |
11684305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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