View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4957_low_16 (Length: 251)
Name: NF4957_low_16
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4957_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 30131035 - 30131159
Alignment:
| Q |
121 |
ttaatgtatggcaatagaactaacacaaaattttgaagaacatgaaatataatgaataaatattaagggaaaaaattcacaatgtggtgattctgaatta |
220 |
Q |
| |
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|||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30131035 |
ttaatgtatgacaatgaaactaaaacaaaattttgaagaacatgaaatataatgaaaaaataataagggaaaaaattcacaatgtggtgattctgaatta |
30131134 |
T |
|
| Q |
221 |
ccaggtggttacaaagaattatcta |
245 |
Q |
| |
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||||||| || ||| |||||||||| |
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| T |
30131135 |
ccaggtgattgcaacgaattatcta |
30131159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 30025838 - 30025717
Alignment:
| Q |
124 |
atgtatggcaatagaactaacacaaaattttgaagaacatgaaatataatgaataaatattaagggaaaaaattcacaatgtggtgattctgaattacca |
223 |
Q |
| |
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||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30025838 |
atgtatgacaatgaaactaaaacaaaattttgaagaacatgaaatataatgaaaaaataataagggaaaaaattcacaatgtggtgattctgaattacca |
30025739 |
T |
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| Q |
224 |
ggtggttacaaagaattatcta |
245 |
Q |
| |
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|||| || ||| |||||||||| |
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| T |
30025738 |
ggtgattgcaacgaattatcta |
30025717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 30116284 - 30116405
Alignment:
| Q |
124 |
atgtatggcaatagaactaacacaaaattttgaagaacatgaaatataatgaataaatattaagggaaaaaattcacaatgtggtgattctgaattacca |
223 |
Q |
| |
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||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30116284 |
atgtatgacaatgaaactaaaacaaaattttgaagaacatgaaatataatgaaaaaataataagggaaaaaattcacaatgtggtgattctgaattacca |
30116383 |
T |
|
| Q |
224 |
ggtggttacaaagaattatcta |
245 |
Q |
| |
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|||| || ||| |||||||||| |
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| T |
30116384 |
ggtgattgcaacgaattatcta |
30116405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 30034856 - 30034980
Alignment:
| Q |
121 |
ttaatgtatggcaatagaactaacacaaaattttgaagaacatgaaatataatgaataaatattaagggaaaaaattcacaatgtggtgattctgaatta |
220 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30034856 |
ttaatgtatgacaatgaaactaaatcaaaattttgaagaacatgaaatataatgaaaaaataataagggaaaaaattcacaatgtggtgattctgaatta |
30034955 |
T |
|
| Q |
221 |
ccaggtggttacaaagaattatcta |
245 |
Q |
| |
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||||||| || ||| |||||||||| |
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| T |
30034956 |
ccaggtgattgcaacgaattatcta |
30034980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 30059999 - 30059875
Alignment:
| Q |
121 |
ttaatgtatggcaatagaactaacacaaaattttgaagaacatgaaatataatgaataaatattaagggaaaaaattcacaatgtggtgattctgaatta |
220 |
Q |
| |
|
|||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
30059999 |
ttaatgtatgtcaatgaaactaaaacaaaattttgaagaacatgaaatataatgaaaaaataataagggaaaaagttcacaatgtggtgattctgaatta |
30059900 |
T |
|
| Q |
221 |
ccaggtggttacaaagaattatcta |
245 |
Q |
| |
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||||||| || ||| |||||||||| |
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|
| T |
30059899 |
ccaggtgattgcaacgaattatcta |
30059875 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 30228994 - 30229118
Alignment:
| Q |
121 |
ttaatgtatggcaatagaactaacacaaaattttgaagaacatgaaatataatgaataaatattaagggaaaaaattcacaatgtggtgattctgaatta |
220 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30228994 |
ttaatgtatgacaatgaaactaaatcaaaattttgaagaacatgaaatataatgaaaaaataataagggaaaaaattcacaatgtggtgattctgaatta |
30229093 |
T |
|
| Q |
221 |
ccaggtggttacaaagaattatcta |
245 |
Q |
| |
|
||||||| || ||| |||||||||| |
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|
| T |
30229094 |
ccaggtgattgcaacgaattatcta |
30229118 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30060119 - 30060044
Alignment:
| Q |
1 |
tgatggtggtaaatgcttagtgccattcgagattatccgattagctttgatccggaaacatgaagatacaccctag |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| ||||| |
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| T |
30060119 |
tgatggtggtaaatgcttagtgccattcgagattagccgactagctttgattgggaaacatgaagatacaacctag |
30060044 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30130915 - 30130990
Alignment:
| Q |
1 |
tgatggtggtaaatgcttagtgccattcgagattatccgattagctttgatccggaaacatgaagatacaccctag |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| ||||| |
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| T |
30130915 |
tgatggtggtaaatgcttagtgccattcgagattagccgactagctttgattgggaaacatgaagatacaacctag |
30130990 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30034736 - 30034811
Alignment:
| Q |
1 |
tgatggtggtaaatgcttagtgccattcgagattatccgattagctttgatccggaaacatgaagatacaccctag |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| || ||||||| ||||||||||||||||| ||||| |
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| T |
30034736 |
tgatggtggtaaatgcttagtgccattcgagattagccgactatctttgattgggaaacatgaagatacaacctag |
30034811 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30228874 - 30228949
Alignment:
| Q |
1 |
tgatggtggtaaatgcttagtgccattcgagattatccgattagctttgatccggaaacatgaagatacaccctag |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| || ||||||| ||||||||||||||||| ||||| |
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|
| T |
30228874 |
tgatggtggtaaatgcttagtgccattcgagattagccgactatctttgattgggaaacatgaagatacaacctag |
30228949 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 30025956 - 30025887
Alignment:
| Q |
6 |
gtggtaaatgcttagtgccattcgagattatccgattagctttgatccggaaacatgaagatacacccta |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
30025956 |
gtggtaaatgcttagtgccattcgagattagccgactagctttgattgggaaacatgaagatacaaccta |
30025887 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 30116166 - 30116235
Alignment:
| Q |
6 |
gtggtaaatgcttagtgccattcgagattatccgattagctttgatccggaaacatgaagatacacccta |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| |||| |
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|
| T |
30116166 |
gtggtaaatgcttagtgccattcgagattagccgactagctttgattgggaaacatgaagatacaaccta |
30116235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 30181436 - 30181479
Alignment:
| Q |
138 |
aactaacacaaaatt-ttgaagaacatgaaatataatgaataaa |
180 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||| |
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|
| T |
30181436 |
aactaacacaaaattattgaagaacatgaaatataataaataaa |
30181479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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