View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4957_low_20 (Length: 246)

Name: NF4957_low_20
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4957_low_20
NF4957_low_20
[»] chr7 (29 HSPs)
chr7 (20-198)||(44725740-44725918)
chr7 (21-159)||(1048243-1048381)
chr7 (21-159)||(7093415-7093553)
chr7 (21-159)||(7350605-7350743)
chr7 (21-159)||(31157239-31157377)
chr7 (21-159)||(22135999-22136137)
chr7 (21-159)||(38395180-38395318)
chr7 (21-159)||(40551026-40551164)
chr7 (33-159)||(36646-36772)
chr7 (21-109)||(7471271-7471359)
chr7 (21-112)||(20298222-20298313)
chr7 (22-112)||(24749494-24749584)
chr7 (21-109)||(4294007-4294095)
chr7 (21-155)||(24816317-24816448)
chr7 (21-112)||(21678966-21679057)
chr7 (21-109)||(28486475-28486563)
chr7 (21-112)||(9679565-9679656)
chr7 (97-157)||(26213920-26213980)
chr7 (199-246)||(1048399-1048446)
chr7 (210-246)||(44725709-44725745)
chr7 (199-246)||(36581-36628)
chr7 (199-246)||(7350761-7350808)
chr7 (199-246)||(38395115-38395162)
chr7 (105-147)||(6047689-6047731)
chr7 (199-246)||(7093571-7093618)
chr7 (199-246)||(22135934-22135981)
chr7 (199-246)||(31157395-31157442)
chr7 (199-246)||(40550961-40551008)
chr7 (105-159)||(13289539-13289593)
[»] chr3 (29 HSPs)
chr3 (21-159)||(43227246-43227384)
chr3 (20-159)||(6064746-6064885)
chr3 (21-159)||(457073-457211)
chr3 (21-159)||(10957277-10957415)
chr3 (21-159)||(11169267-11169405)
chr3 (21-159)||(18098122-18098260)
chr3 (22-159)||(5898578-5898715)
chr3 (26-159)||(4309466-4309599)
chr3 (21-112)||(42991176-42991267)
chr3 (21-112)||(53916964-53917055)
chr3 (36-159)||(23634596-23634716)
chr3 (21-112)||(891197-891288)
chr3 (21-112)||(3315559-3315650)
chr3 (21-112)||(43422760-43422851)
chr3 (21-112)||(28101298-28101389)
chr3 (199-246)||(11169202-11169249)
chr3 (199-246)||(18098278-18098325)
chr3 (199-246)||(35918946-35918993)
chr3 (199-246)||(43227181-43227228)
chr3 (105-157)||(27421807-27421859)
chr3 (199-246)||(457008-457055)
chr3 (199-246)||(5192751-5192798)
chr3 (199-246)||(6064903-6064950)
chr3 (199-246)||(10957433-10957480)
chr3 (199-246)||(23634531-23634578)
chr3 (29-85)||(25634738-25634794)
chr3 (199-246)||(4309617-4309664)
chr3 (199-246)||(5898513-5898560)
chr3 (112-156)||(15830240-15830284)
[»] chr1 (24 HSPs)
chr1 (21-159)||(20301318-20301456)
chr1 (21-159)||(51751224-51751362)
chr1 (21-159)||(27338084-27338222)
chr1 (21-159)||(16227355-16227493)
chr1 (21-159)||(47178549-47178687)
chr1 (21-159)||(28202651-28202789)
chr1 (24-120)||(28841615-28841711)
chr1 (21-112)||(31736766-31736857)
chr1 (21-159)||(13126691-13126826)
chr1 (21-112)||(31424324-31424415)
chr1 (21-109)||(6996485-6996573)
chr1 (21-112)||(25250571-25250662)
chr1 (36-159)||(8348039-8348160)
chr1 (23-112)||(29003263-29003352)
chr1 (21-112)||(16429846-16429936)
chr1 (23-101)||(28997547-28997625)
chr1 (26-108)||(50078089-50078171)
chr1 (199-246)||(20301253-20301300)
chr1 (199-246)||(28202807-28202854)
chr1 (199-246)||(16227290-16227337)
chr1 (199-246)||(27338240-27338287)
chr1 (199-246)||(47178484-47178531)
chr1 (199-246)||(51751159-51751206)
chr1 (201-246)||(28841544-28841589)
[»] chr4 (23 HSPs)
chr4 (21-159)||(5099724-5099862)
chr4 (21-159)||(22781691-22781829)
chr4 (21-159)||(22045669-22045807)
chr4 (21-159)||(16933102-16933240)
chr4 (21-157)||(11007522-11007658)
chr4 (21-159)||(22133571-22133709)
chr4 (21-159)||(9175427-9175565)
chr4 (21-159)||(12399772-12399910)
chr4 (21-153)||(12402047-12402179)
chr4 (21-112)||(14788723-14788814)
chr4 (21-112)||(22802027-22802118)
chr4 (33-112)||(16454255-16454334)
chr4 (21-109)||(36920788-36920876)
chr4 (21-109)||(47563710-47563798)
chr4 (33-147)||(26558843-26558954)
chr4 (199-246)||(12402203-12402250)
chr4 (21-110)||(36379180-36379269)
chr4 (199-246)||(11007678-11007725)
chr4 (199-246)||(12399928-12399975)
chr4 (199-246)||(22133727-22133774)
chr4 (199-246)||(22781847-22781894)
chr4 (33-85)||(18536807-18536859)
chr4 (199-246)||(22045825-22045872)
[»] scaffold0140 (2 HSPs)
scaffold0140 (21-159)||(23313-23451)
scaffold0140 (199-246)||(23248-23295)
[»] chr8 (11 HSPs)
chr8 (21-159)||(43080844-43080982)
chr8 (21-159)||(18811950-18812088)
chr8 (21-159)||(27828227-27828365)
chr8 (21-159)||(15069812-15069950)
chr8 (21-100)||(41383618-41383696)
chr8 (97-159)||(31577329-31577391)
chr8 (87-147)||(17848783-17848843)
chr8 (199-246)||(15069747-15069794)
chr8 (199-246)||(18811885-18811932)
chr8 (199-246)||(27828162-27828209)
chr8 (200-246)||(43080779-43080825)
[»] chr5 (22 HSPs)
chr5 (21-159)||(23666233-23666371)
chr5 (21-159)||(10750885-10751023)
chr5 (21-159)||(15355803-15355941)
chr5 (21-159)||(31543920-31544058)
chr5 (20-159)||(6746258-6746397)
chr5 (21-159)||(18467874-18468012)
chr5 (21-159)||(34478373-34478511)
chr5 (21-159)||(20505157-20505295)
chr5 (21-109)||(658919-659007)
chr5 (21-112)||(20043870-20043961)
chr5 (21-112)||(27911330-27911421)
chr5 (20-112)||(18510703-18510795)
chr5 (21-112)||(31467183-31467274)
chr5 (21-90)||(25806350-25806419)
chr5 (199-246)||(6746193-6746240)
chr5 (199-246)||(10750820-10750867)
chr5 (199-246)||(18467809-18467856)
chr5 (199-246)||(34478529-34478576)
chr5 (199-246)||(15355959-15356006)
chr5 (199-246)||(20505313-20505360)
chr5 (199-246)||(23666168-23666215)
chr5 (199-246)||(31543855-31543902)
[»] scaffold1899 (2 HSPs)
scaffold1899 (21-159)||(811-949)
scaffold1899 (199-246)||(746-793)
[»] chr6 (8 HSPs)
chr6 (21-159)||(26067349-26067487)
chr6 (21-159)||(33310076-33310214)
chr6 (21-112)||(15533892-15533983)
chr6 (21-112)||(3631233-3631324)
chr6 (21-62)||(3395260-3395301)
chr6 (20-69)||(26944465-26944514)
chr6 (199-246)||(26067505-26067552)
chr6 (199-246)||(33310011-33310058)
[»] chr2 (10 HSPs)
chr2 (20-159)||(21519647-21519786)
chr2 (25-159)||(19503294-19503428)
chr2 (21-159)||(35216924-35217062)
chr2 (21-146)||(36560098-36560223)
chr2 (21-112)||(31734169-31734260)
chr2 (21-112)||(6263444-6263535)
chr2 (36-159)||(28569392-28569512)
chr2 (199-246)||(19503446-19503493)
chr2 (199-246)||(35217080-35217127)
chr2 (199-239)||(21519804-21519844)
[»] scaffold0011 (2 HSPs)
scaffold0011 (21-159)||(34745-34883)
scaffold0011 (199-246)||(34680-34727)
[»] scaffold0025 (2 HSPs)
scaffold0025 (21-159)||(72468-72606)
scaffold0025 (199-246)||(72624-72671)
[»] scaffold1674 (1 HSPs)
scaffold1674 (20-112)||(741-833)
[»] scaffold0005 (1 HSPs)
scaffold0005 (21-112)||(50916-51007)
[»] scaffold0004 (1 HSPs)
scaffold0004 (21-112)||(80764-80855)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 44725918 - 44725740
Alignment:
Q  20 acaccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44725918 acaccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcctccaaacaacaccacaccatcagagcacccgcatcctcataaccct 44725819  T
Q  120 ctgagacaatttgtgcggagttaccattaatctccggacagttaaagcattctctacctccaccatcttgtgacagtta 198  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  44725818 ctgagacaatttgtgcggagttaccattaatctctagacagttaaagcattctctacctccaccatcttgtgacagtta 44725740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 1048243 - 1048381
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  1048243 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 1048342  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||||||||||||||||||||||||    
T  1048343 agagacaatttgtgcggagttaccattaatctccggaca 1048381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 7093415 - 7093553
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  7093415 caccgctccactaggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacctgcatcctcataaccctc 7093514  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||||||||||||||||||||||||    
T  7093515 agagacaatttgtgcggagttaccattaatctccggaca 7093553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 7350605 - 7350743
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  7350605 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcttcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 7350704  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||||||||||||||||||||||||    
T  7350705 agagacaatttgtgcggagttaccattaatctccggaca 7350743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 31157239 - 31157377
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  31157239 caccgctccactaggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 31157338  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||| |||||||||||||||||||||||||||||||||    
T  31157339 agagataatttgtgcggagttaccattaatctccggaca 31157377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 22136137 - 22135999
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  22136137 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcttcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 22136038  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||| ||||||||||||||||||||    
T  22136037 agagacaatttgtgcggaattaccattaatctccggaca 22135999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 38395318 - 38395180
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  38395318 caccgctccactaggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 38395219  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||||||||||||||||| ||| |||||    
T  38395218 agagacaatttgtgcggagttaccattaacctctggaca 38395180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 40551164 - 40551026
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  40551164 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcttcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 40551065  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||| ||||||||||||||||||||    
T  40551064 agagacaatttgtgcggaattaccattaatctccggaca 40551026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 36772 - 36646
Alignment:
Q  33 aggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctctgagacaatttg 132  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||  ||||||||||||||||  ||||||||||    
T  36772 aggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccattagagcacctacatcctcataaccctcatagacaatttg 36673  T
Q  133 tgcggagttaccattaatctccggaca 159  Q
    |||||||||||||||||||||||||||    
T  36672 tgcggagttaccattaatctccggaca 36646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 7471271 - 7471359
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcc 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  7471271 caccgctccactaggcatcactctcaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcc 7471359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 20298313 - 20298222
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||| |||||||||||||||||||||||||||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  20298313 caccgttccactaggcatcactcccaaggtgagacatatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctca 20298222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 24749584 - 24749494
Alignment:
Q  22 accgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||    
T  24749584 accgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcttccaaacaacaccacaccatcagagcacccacatcctca 24749494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 4294007 - 4294095
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcc 109  Q
    |||||||||||||||||||| || |||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  4294007 caccgctccactaggcatcattctcaagttgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcc 4294095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 24816317 - 24816448
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||| || ||||||||||||||||||||||||||||||  ||||| || ||||||||||||   |||| || ||||   | |||||||||||||||    
T  24816317 caccgctctacaaggcatcactcccaaggtgagacacatcacattcttcatcctccaaacaacac---accaccaaagcatttgaatcctcataaccctc 24816413  T
Q  121 tgagacaatttgtgcggagttaccattaatctccg 155  Q
     ||||| ||||||||||||||||||||||||||||    
T  24816414 agagactatttgtgcggagttaccattaatctccg 24816448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 21679057 - 21678966
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||| || |||||||||||| || ||||||||| |||||||||||||    
T  21679057 caccgctccactaggcatcattctcaaggtgagacacatcaccttcttcatcctccaaacaacactacgccatcagagtacccgcatcctca 21678966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 28486563 - 28486475
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcc 109  Q
    ||||||||||| |||||||| || ||||||||||||||||||| ||||| |  ||||||||||||||||||||||||||||| ||||||    
T  28486563 caccgctccacaaggcatcaatctcaaggtgagacacatcaccttcttcattctccaaacaacaccacaccatcagagcacctgcatcc 28486475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 9679656 - 9679565
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||||||||||||| |||||||| |||||||||||||||| | ||||| || |||||||||||||||||||| ||| ||| | ||||||||    
T  9679656 caccgctccactaggtatcactcctaaggtgagacacatcatcttcttcatcctccaaacaacaccacaccataagaacactcacatcctca 9679565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 26213980 - 26213920
Alignment:
Q  97 agcacccgcatcctcataaccctctgagacaatttgtgcggagttaccattaatctccgga 157  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||||||||||  ||||||||    
T  26213980 agcacccacatcctcataaccctcagagacaatttgtgaggagttaccattgttctccgga 26213920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 1048399 - 1048446
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  1048399 ccatcttgtgacagttaaagcattcaaaccttgacttgttaccactct 1048446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 44725745 - 44725709
Alignment:
Q  210 cagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  44725745 cagttaaagcattcagaccttgacttgttaccactct 44725709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 36628 - 36581
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  36628 ccatcttgtgacagttaaagcattcaaaccttgacttgttaccgctct 36581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 7350761 - 7350808
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||||    
T  7350761 ccatcttgtgacagttaaagcattcaagccttgacttgttaccactct 7350808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 38395162 - 38395115
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| || |||||||||||| |||||||||||||||||||||    
T  38395162 ccatcttgtgacaattaaagcattcaaaccttgacttgttaccactct 38395115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 6047731 - 6047689
Alignment:
Q  105 catcctcataaccctctgagacaatttgtgcggagttaccatt 147  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  6047731 catcctcataaccctcaaagacaatttgtgcggagttaccatt 6047689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 7093571 - 7093618
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||||   ||||||||||||||||||    
T  7093571 ccatcttgtgacagttaaagcattcaggttttgacttgttaccactct 7093618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 22135981 - 22135934
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    ||||||| || ||||||||||||||| ||||||||||||| |||||||    
T  22135981 ccatcttatgacagttaaagcattcaaaccttgacttgtttccactct 22135934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 31157395 - 31157442
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||| ||||| ||||||||||||||| ||||||||||||| |||||||    
T  31157395 ccatgttgtgacagttaaagcattcaaaccttgacttgtttccactct 31157442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 40551008 - 40550961
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    ||||||| || ||||||||||||||| ||||||||||||| |||||||    
T  40551008 ccatcttatgacagttaaagcattcaaaccttgacttgtttccactct 40550961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 13289539 - 13289593
Alignment:
Q  105 catcctcataaccctctgagacaatttgtgcggagttaccattaatctccggaca 159  Q
    |||||||| |||||||  |||||||||| ||||||||||||||  ||||||||||    
T  13289539 catcctcaaaaccctcaaagacaatttgcgcggagttaccattgttctccggaca 13289593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 43227384 - 43227246
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  43227384 caccgctccactaggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 43227285  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||||||||||||||||||||||||    
T  43227284 agagacaatttgtgcggagttaccattaatctccggaca 43227246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 6064746 - 6064885
Alignment:
Q  20 acaccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccct 119  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  6064746 acaccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccct 6064845  T
Q  120 ctgagacaatttgtgcggagttaccattaatctccggaca 159  Q
    | |||||||||||||||||||||||||||||||| |||||    
T  6064846 cagagacaatttgtgcggagttaccattaatctctggaca 6064885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 457211 - 457073
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  457211 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcttcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 457112  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||||||| |||||||||||||||||||    
T  457111 agagacaatttgtgcggagctaccattaatctccggaca 457073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 10957277 - 10957415
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  10957277 caccactccactaggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 10957376  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||||||||||||||||| |||||||||    
T  10957377 agagacaatttgtgcggagttaccattaacctccggaca 10957415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 11169405 - 11169267
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| ||||||||||||||| |||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||    
T  11169405 caccgctccactaggcatcaatcccaaggtgagacatatcaccttcttcatcctccaaacaacaccacaccatcagagctcccgcatcctcataaccctc 11169306  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
    | |||||||||||||||||||||||||||||||||||||    
T  11169305 taagacaatttgtgcggagttaccattaatctccggaca 11169267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 18098122 - 18098260
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||| ||||| || ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  18098122 caccgctccactagacatcaatctcaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 18098221  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||||||||||||||||||||||||    
T  18098222 agagacaatttgtgcggagttaccattaatctccggaca 18098260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 5898715 - 5898578
Alignment:
Q  22 accgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctct 121  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  5898715 accgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacttgcatcctcataactctct 5898616  T
Q  122 gagacaatttgtgcggagttaccattaatctccggaca 159  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5898615 gagacaatttgtgcggagttaccattaatctccggaca 5898578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 4309466 - 4309599
Alignment:
Q  26 ctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctctgaga 125  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  4309466 ctccactaggcatcactcccaaagtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatccttttaaccctcagaga 4309565  T
Q  126 caatttgtgcggagttaccattaatctccggaca 159  Q
    ||||||||||||||||| ||||||||| ||||||    
T  4309566 caatttgtgcggagttatcattaatcttcggaca 4309599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 42991267 - 42991176
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  42991267 caccgctccattaggcatcacttccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctca 42991176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 53916964 - 53917055
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||| ||||||||||    
T  53916964 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctacaaacaacaccacaccatcagagcactcgcatcctca 53917055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 159
Target Start/End: Complemental strand, 23634716 - 23634596
Alignment:
Q  36 catcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctctgagacaatttgtgc 135  Q
    ||||| |||||||||||||||||||||| ||||| || |||||| |||||   |||| ||||||||  ||||||||||||||||| |||||||||||||     
T  23634716 catcaatcccaaggtgagacacatcaccttcttcatcctccaaaaaacac---accaccagagcacatgcatcctcataaccctcagagacaatttgtgt 23634620  T
Q  136 ggagttaccattaatctccggaca 159  Q
    |||||| |||||||||||||||||    
T  23634619 ggagttgccattaatctccggaca 23634596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 891197 - 891288
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||||||||||||||||||||||| |||| ||||||||||||| ||||| || ||||||||||||||||||| |||||||||| ||||||||    
T  891197 caccgctccactaggcatcactccaaaggcgagacacatcaccttcttcatcttccaaacaacaccacaccaccagagcaccctcatcctca 891288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 3315650 - 3315559
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||| |||||||| |||||| ||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  3315650 cacctctccactaagcatcattcccaaggtgagatacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctca 3315559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 43422760 - 43422851
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||| ||||||||||||||||| |||||||||||| |||||| ||||| || ||||||||||||||||||||||||||||| |||||||||    
T  43422760 caccgttccactaggcatcactctcaaggtgagacagatcaccttcttcatcctccaaacaacaccacaccatcagagcacctgcatcctca 43422851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 28101298 - 28101389
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||||||||||||||||||| |  |||||||||||| |||||| ||||| || ||||||||||||||||||||||||| |||||||||||||    
T  28101298 caccgctccactaggcatcattttcaaggtgagacatatcaccttcttcatcctccaaacaacaccacaccatcagagaacccgcatcctca 28101389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 11169249 - 11169202
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  11169249 ccatcttgtgacagttaaagcattcaaaccttgacttgttaccactct 11169202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 18098278 - 18098325
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  18098278 ccatcttgtgacagttaaagcattcagactttgacttgttaccactct 18098325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 35918946 - 35918993
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  35918946 ccatcttgtgacagttaaagcattcagactttgacttgttaccactct 35918993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 43227228 - 43227181
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  43227228 ccatcttgtgacagttaaagcattcagactttgacttgttaccactct 43227181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 27421859 - 27421807
Alignment:
Q  105 catcctcataaccctctgagacaatttgtgcggagttaccattaatctccgga 157  Q
    ||||||||||| |||| ||||||||||||||||||||||||||  ||||||||    
T  27421859 catcctcataaacctcggagacaatttgtgcggagttaccattgttctccgga 27421807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 457055 - 457008
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||||    
T  457055 ccatcttgtgacagttaaagcattcaagccttgacttgttaccactct 457008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 5192798 - 5192751
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  5192798 ccatcttgtgacagttaaagcattcaaaccttgacttgtttccactct 5192751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 6064903 - 6064950
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  6064903 ccatcttgtgacagttaaagcattcaaaccttgacttgtttccactct 6064950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 10957433 - 10957480
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||    
T  10957433 ccatcttgtgacagttaaagcattcaaacctttacttgttaccactct 10957480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 23634578 - 23634531
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||| |||| ||||||||||||||||||    
T  23634578 ccatcttgtgacagttaaagcatttagactttgacttgttaccactct 23634531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 25634794 - 25634738
Alignment:
Q  29 cactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacac 85  Q
    |||||||||||| || |||||||||| |||||||| ||||| || ||||||||||||    
T  25634794 cactaggcatcattcacaaggtgagaaacatcaccttcttcatcctccaaacaacac 25634738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 4309617 - 4309664
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| || |||||||||||| |||||    
T  4309617 ccatcttgtgacagttaaagcattcaaactttgacttgttactactct 4309664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 5898560 - 5898513
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||| | ||||| ||||||||||||    
T  5898560 ccatcttgtgacagttaaagcattcaggctttgacctgttaccactct 5898513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 15830240 - 15830284
Alignment:
Q  112 ataaccctctgagacaatttgtgcggagttaccattaatctccgg 156  Q
    ||||||||| ||||||||||| || |||||||||||| |||||||    
T  15830240 ataaccctcggagacaatttgcgcagagttaccattattctccgg 15830284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 20301456 - 20301318
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||    
T  20301456 caccgctccactaggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacatcatcagagcacccgcatcctcataaccctc 20301357  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20301356 tgagacaatttgtgcggagttaccattaatctccggaca 20301318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 51751362 - 51751224
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  51751362 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 51751263  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||||||||||||||||||||||||    
T  51751262 agagacaatttgtgcggagttaccattaatctccggaca 51751224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 27338084 - 27338222
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    ||||||||||||||| |||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  27338084 caccgctccactaggaatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacctgcatcctcataaccctc 27338183  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27338184 tgagacaatttgtgcggagttaccattaatctccggaca 27338222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 16227493 - 16227355
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  16227493 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 16227394  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||| |||||||||| ||||||||||||||||    
T  16227393 agagacaatttttgcggagttatcattaatctccggaca 16227355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 47178687 - 47178549
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  47178687 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacctgcatcctcataaccctc 47178588  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||| |||||||||||||||||||||||||||||||||    
T  47178587 agagataatttgtgcggagttaccattaatctccggaca 47178549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 28202651 - 28202789
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||| |||||||||||||||||||||||||||||||| | | ||| || ||||||||||||||||||||||||||||| ||||||||||||||||     
T  28202651 caccgctctactaggcatcactcccaaggtgagacacatcaacttattcatcctccaaacaacaccacaccatcagagcacctgcatcctcataaccctt 28202750  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||||||||||||||||||||||||    
T  28202751 agagacaatttgtgcggagttaccattaatctccggaca 28202789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 28841711 - 28841615
Alignment:
Q  24 cgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  28841711 cgctccactacgcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 28841615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 31736766 - 31736857
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  31736766 caccgcttcactaggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctca 31736857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 13126691 - 13126826
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||| || |||||||||||||||||||||| ||||| || ||||| || ||| ||||||||   |||| || ||||||||||||||||||||||||    
T  13126691 caccgctctacaaggcatcactcccaaggtgagaaacatcgccttcttcatcctcccaacaacac---accaccaaagcacccgcatcctcataaccctc 13126787  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||||||||||||||| ||||| |||||    
T  13126788 agagacaatttgtgcggagttaccattgatctctggaca 13126826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 31424324 - 31424415
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||||    
T  31424324 caccgctccactaggaatcactcccaagatgagacacatcaccttcttcatcctccaaacaataccacaccatcagagcacccgcatcctca 31424415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 6996573 - 6996485
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcc 109  Q
    |||||||||||||||||||| ||| || ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  6996573 caccgctccactaggcatcaatccaaatgtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcc 6996485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 25250571 - 25250662
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||||||||||||||||||| || ||||||||||||||||||  |||||  | |||||||||||||||||||||||||||||||||||||||    
T  25250571 caccgctccactaggcatcattctcaaggtgagacacatcacattcttcaccctccaaacaacaccacaccatcagagcacccgcatcctca 25250662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 8348039 - 8348160
Alignment:
Q  36 catcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctctgagacaatttgtgc 135  Q
    ||||||||||||||||||| |||||||| ||||| || ||||||||||||   ||||  | ||||||||| |||||||||||||| || |||||||||||    
T  8348039 catcactcccaaggtgagaaacatcaccttcttcatcctccaaacaacac---accacaaaagcacccgcgtcctcataaccctcagaaacaatttgtgc 8348135  T
Q  136 ggagttacc-attaatctccggaca 159  Q
    ||||||||| |||||||||||||||    
T  8348136 ggagttaccaattaatctccggaca 8348160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 29003263 - 29003352
Alignment:
Q  23 ccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||| | ||||||||    
T  29003263 ccgctccactaggcatcactgccaaggtgtgacacatcaccttcttcatcctccaaacaacaccacaccatcagagcactcacatcctca 29003352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 16429936 - 16429846
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||| ||||||| |||||||||||    
T  16429936 caccgttccactaggcatcactcccaaggtgagacacatcacctttttcatcctccaaacaacaccacaccaccagagca-ccgcatcctca 16429846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 28997547 - 28997625
Alignment:
Q  23 ccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcac 101  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  28997547 ccgctccactaggcatcactgccaaggtgtgacacatcaccttcttcatcctccaaacaacaccacaccatcagagcac 28997625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 50078089 - 50078171
Alignment:
Q  26 ctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatc 108  Q
    ||||| |||| |||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||    
T  50078089 ctccaataggaatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacctgcatc 50078171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 20301300 - 20301253
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  20301300 ccatcttgtgacagttaaagcattcaaaccttgacttgttaccactct 20301253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 28202807 - 28202854
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  28202807 ccatcttgtgacagttaaagcattcagactttgacttgttaccactct 28202854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 16227337 - 16227290
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  16227337 ccatcttgtgacagttaaagcattcaaaccttgacttgtttccactct 16227290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 27338240 - 27338287
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||||    
T  27338240 ccatcttgtgacagttaaagcattcaggctttgacttgttaccactct 27338287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 47178531 - 47178484
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||||    
T  47178531 ccatcttgtgacagttaaagcattcaagccttgacttgttaccactct 47178484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 51751206 - 51751159
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  51751206 ccatcttgtgacagttaaagcattcaaaccttgacttgtttccactct 51751159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 28841589 - 28841544
Alignment:
Q  201 atcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||    
T  28841589 atcttgtgacagttaaagcattcaaaccttgacttgtttccactct 28841544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 5099862 - 5099724
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||    
T  5099862 caccgctccactaggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcatagccctc 5099763  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||||||||||||||||||||||||    
T  5099762 agagacaatttgtgcggagttaccattaatctccggaca 5099724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 22781691 - 22781829
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  22781691 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 22781790  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||||||||||||||||||||||||    
T  22781791 agagacaatttgtgcggagttaccattaatctccggaca 22781829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 22045669 - 22045807
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| ||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  22045669 caccgctccactaggcatcaatcccaaggtgagatacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 22045768  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  22045769 tgagataatttgtgcggagttaccattaatctccggaca 22045807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 16933102 - 16933240
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  16933102 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcttcctccaaacaacaccacaccatcagagcacctgcatcctcataaccctc 16933201  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||||||| |||||||||||||||||||    
T  16933202 agagacaatttgtgcggagctaccattaatctccggaca 16933240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 11007522 - 11007658
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||| |||||||||||||||||    
T  11007522 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatccttcaaacaacaccacaccatcagagcacctgcatcctcataaccctc 11007621  T
Q  121 tgagacaatttgtgcggagttaccattaatctccgga 157  Q
     ||||||||||||||||||||||||||||||||||||    
T  11007622 agagacaatttgtgcggagttaccattaatctccgga 11007658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 22133571 - 22133709
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||      
T  22133571 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataacccct 22133670  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  22133671 tgagacaatttgtgcggagttaccattaacccccggaca 22133709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 9175427 - 9175565
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||| |||||||||||||| |||| ||||||||||||||||||||     
T  9175427 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaagcaacaccacaccattagagaacccgcatcctcataaccctt 9175526  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||| ||||||||||||||| |||||||||||||||||    
T  9175527 agagataatttgtgcggagtttccattaatctccggaca 9175565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 12399772 - 12399910
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||| ||   |||| |||||||||||||||| ||||| ||||||||||||||||     
T  12399772 caccgctccactaggcatcaatcccaaggtgagacgcatcaccttcttcatccagcaaaaaacaccacaccatcagtgcacctgcatcctcataaccctt 12399871  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||||||||||||||| |||||| ||||    
T  12399872 agagacaatttgtgcggagttaccatttatctccagaca 12399910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 12402047 - 12402179
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    ||||||| |||||||||||| |||||||||||||||||||||| ||||| ||   |||| ||||| |||||||||| ||||| |||||||||||||||||    
T  12402047 caccgcttcactaggcatcaatcccaaggtgagacacatcaccttcttcatccagcaaaaaacactacaccatcagtgcacctgcatcctcataaccctc 12402146  T
Q  121 tgagacaatttgtgcggagttaccattaatctc 153  Q
     |||||||||||||||||||||||||| |||||    
T  12402147 agagacaatttgtgcggagttaccatttatctc 12402179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 14788723 - 14788814
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||    
T  14788723 caccgctccactaggcatcactcccaaggtgagacacatcaccttcttcatcctcgaaacaacaccacaccatcagagcacccgcatcctca 14788814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 22802027 - 22802118
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||    
T  22802027 caccactccactaggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccattagagcacccgcatcctca 22802118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 16454334 - 16454255
Alignment:
Q  33 aggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  16454334 aggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctca 16454255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 36920788 - 36920876
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcc 109  Q
    |||||||||||||||||||| || ||||||||||||||||||  ||||| || |||||||| |||||||||||||||||||||||||||    
T  36920788 caccgctccactaggcatcaatctcaaggtgagacacatcacattcttcatcctccaaacatcaccacaccatcagagcacccgcatcc 36920876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 47563798 - 47563710
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcc 109  Q
    |||||||| |||| | |||| |||||||||||||||||||||  ||||| || ||||||||||||||||||||||||||||| ||||||    
T  47563798 caccgctctactatgtatcaatcccaaggtgagacacatcacattcttcatcctccaaacaacaccacaccatcagagcacctgcatcc 47563710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 26558954 - 26558843
Alignment:
Q  33 aggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctctgagacaatttg 132  Q
    |||||||| ||| ||||||||| |||||||| ||||| ||| || ||||| ||   || | || ||||||| ||||||||||||||||  ||||||||||    
T  26558954 aggcatcagtccaaaggtgagagacatcaccttcttcatcaccccaacaagac---acaaccaaagcacccacatcctcataaccctcgaagacaatttg 26558858  T
Q  133 tgcggagttaccatt 147  Q
    |||||||||||||||    
T  26558857 tgcggagttaccatt 26558843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 12402203 - 12402250
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  12402203 ccatcttgtgacagttaaagcattcagactttgacttgttaccactct 12402250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 36379269 - 36379180
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcct 110  Q
    |||||||||||||||||||| ||||||||||||| | |||  | ||||| || |||||||||||  ||||| ||||| ||||| ||||||    
T  36379269 caccgctccactaggcatcattcccaaggtgagaaaaatcgtcttcttcatcctccaaacaacattacaccgtcagaccacccacatcct 36379180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 11007678 - 11007725
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  11007678 ccatcttgtgacagttaaagcattcaaaccttgacttgtttccactct 11007725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 12399928 - 12399975
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    ||||||| || |||||||||||||||||| ||||||||||||||||||    
T  12399928 ccatcttatgacagttaaagcattcagactttgacttgttaccactct 12399975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 22133727 - 22133774
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  22133727 ccatcttgtgacagttaaagcattcaaaccttgacttgtttccactct 22133774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 22781847 - 22781894
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||||    
T  22781847 ccatcttgtgacagttaaagcattcaagccttgacttgttaccactct 22781894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 18536807 - 18536859
Alignment:
Q  33 aggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacac 85  Q
    ||||||||||| |||||||||| |||||||| ||||| || ||||||||||||    
T  18536807 aggcatcactcacaaggtgagaaacatcaccttcttcatcctccaaacaacac 18536859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 22045825 - 22045872
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    ||||||| || ||||||||||||||| ||||||||||||| |||||||    
T  22045825 ccatcttatgacagttaaagcattcaaaccttgacttgtttccactct 22045872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 23451 - 23313
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  23451 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcttcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 23352  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||| ||||||||||||||||||||    
T  23351 agagacaatttgtgcggaattaccattaatctccggaca 23313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 23295 - 23248
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    ||||||| || ||||||||||||||| ||||||||||||| |||||||    
T  23295 ccatcttatgacagttaaagcattcaaaccttgacttgtttccactct 23248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 43080982 - 43080844
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  43080982 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcttcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 43080883  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||||||| |||||||||||||||||||    
T  43080882 agagacaatttgtgcggagctaccattaatctccggaca 43080844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 18812088 - 18811950
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    ||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  18812088 caccgcttcactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 18811989  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||||||||||||||||||||| |||||    
T  18811988 agagacaatttgtgcggagttaccattaatctctggaca 18811950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 27828365 - 27828227
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  27828365 caccgctccactaggcatcaatcccaaggtgagacacatcatcttcttcatcctccaaacaacaccacaccatcagagcacctgcatcctcataaccctc 27828266  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||||||||||||||||| || ||||||    
T  27828265 agagacaatttgtgcggagttaccattaaccttcggaca 27828227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 15069950 - 15069812
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||  ||||||| ||||| || |||||||||||||||||||||| |||||| |||||||||||||||||    
T  15069950 caccgctccactaggcatcaatcccaaggtgagatccatcaccttcttcatcctccaaacaacaccacaccatcaaagcacctgcatcctcataaccctc 15069851  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||||||||||||||||||| ||||    
T  15069850 agagacaatttgtgcggagttaccattaatctccagaca 15069812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 41383696 - 41383618
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||| || || || ||||||||| |||||||||||||||||    
T  41383696 caccgctccactaggcatcactctcaaggtgagacacatcaccttcatcatcctccaaacaa-accacaccatcagagca 41383618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 31577329 - 31577391
Alignment:
Q  97 agcacccgcatcctcataaccctctgagacaatttgtgcggagttaccattaatctccggaca 159  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| ||||||    
T  31577329 agcacccgcatcctcataaccctcagagaaaatttgtgcggagttaccattattcttcggaca 31577391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 17848843 - 17848783
Alignment:
Q  87 acaccatcagagcacccgcatcctcataaccctctgagacaatttgtgcggagttaccatt 147  Q
    ||||||||| ||||||||  | ||||| |||||| ||||||||||||||||||||||||||    
T  17848843 acaccatcaaagcacccgtgttctcatcaccctcggagacaatttgtgcggagttaccatt 17848783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 15069794 - 15069747
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  15069794 ccatcttgtgacagttaaagcattcagactttgacttattaccactct 15069747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 18811932 - 18811885
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  18811932 ccatcttgtgacagttaaagcattcaaaccttgacttgtttccactct 18811885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 27828209 - 27828162
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    ||||||||||  |||||||||||||| || ||||||||||||||||||    
T  27828209 ccatcttgtgatagttaaagcattcaaactttgacttgttaccactct 27828162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 43080825 - 43080779
Alignment:
Q  200 catcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    ||||||||| ||||||||||||||| |||||| |||||| |||||||    
T  43080825 catcttgtgacagttaaagcattcaaaccttgccttgtttccactct 43080779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 23666371 - 23666233
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  23666371 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcttcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 23666272  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||| ||||||||||||||||||||    
T  23666271 agagacaatttgtgcggaattaccattaatctccggaca 23666233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 10751023 - 10750885
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  10751023 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 10750924  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||| ||||||||||||| |||||||||    
T  10750923 agagacaatttgtgctgagttaccattaacctccggaca 10750885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 15355803 - 15355941
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||||||||||||||    
T  15355803 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcttcctccaaacaacaccacaccatcaaagcacccgcatcctcataaccctc 15355902  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||| ||||||||||||||||||||    
T  15355903 agagacaatttgtgcggaattaccattaatctccggaca 15355941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 31544058 - 31543920
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||    
T  31544058 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcttcctccaaacaacaccacaccatcagagcacccgcatcctcacaaccctc 31543959  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  31543958 tgagataatttgtgcggaattaccattaatctccggaca 31543920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 6746397 - 6746258
Alignment:
Q  20 acaccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccct 119  Q
    ||||||||||||||||||||| ||| |||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||||||    
T  6746397 acaccgctccactaggcatcaatcctaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccattagagcacccgcatcctcataaccct 6746298  T
Q  120 ctgagacaatttgtgcggagttaccattaatctccggaca 159  Q
    | ||||||||||||||||||||||||| ||||||||||||    
T  6746297 cagagacaatttgtgcggagttaccatcaatctccggaca 6746258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 18468012 - 18467874
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |||||| |  ||||||||||||||    
T  18468012 caccgctccactaggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcatagcacctgtgtcctcataaccctc 18467913  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||||||||||||||||||||||||    
T  18467912 agagacaatttgtgcggagttaccattaatctccggaca 18467874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 34478373 - 34478511
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||     
T  34478373 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcaccagcatcctcataaccctt 34478472  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||| ||||||||||||||||||||||||    
T  34478473 agagacaatttgtgtggagttaccattaatctccggaca 34478511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 20505157 - 20505295
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||| |||||||||||||||  | ||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  20505157 caccactccactaggcatcaacctcaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacctgcatcctcataaccctc 20505256  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||| |||||||||||||||||||||||    
T  20505257 agagacaatttgtgcagagttaccattaatctccggaca 20505295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 659007 - 658919
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  659007 caccgctccactaggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcc 658919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 20043961 - 20043870
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||    
T  20043961 caccgctccactaggaatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacctgcatcctca 20043870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 27911421 - 27911330
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||||||||||||||||||| |||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  27911421 caccgctccactaggcatcaatcccaaggtgagacacgtcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctca 27911330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 18510703 - 18510795
Alignment:
Q  20 acaccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||||||||||||||||||||||||||||||||||||||||| | | ||| || |||||||||||||||||||||||||||||| ||||||||    
T  18510703 acaccgctccactaggcatcactcccaaggtgagacacatcatcttattcatcgtccaaacaacaccacaccatcagagcacccacatcctca 18510795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 31467183 - 31467274
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||||||||||||||||||| |||||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||    
T  31467183 caccgctccactaggcatcaatcccaaagtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccacatcctca 31467274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 25806419 - 25806350
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacac 90  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||    
T  25806419 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacac 25806350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 6746240 - 6746193
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  6746240 ccatcttgtgacagttaaagcattcagactttgacttgttaccactct 6746193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 10750867 - 10750820
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  10750867 ccatcttgtgacagttaaagcattcaaaccttgacttgtttccactct 10750820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 18467856 - 18467809
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||||    
T  18467856 ccatcttgtgacagttaaagcattcaggctttgacttgttaccactct 18467809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 34478529 - 34478576
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  34478529 ccatcttgtgacagttaaagcattcaaaccttgacttgtttccactct 34478576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 15355959 - 15356006
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    ||||||| || ||||||||||||||| ||||||||||||| |||||||    
T  15355959 ccatcttatgacagttaaagcattcaaaccttgacttgtttccactct 15356006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 20505313 - 20505360
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||| ||||||||  ||||||||||||||||||    
T  20505313 ccatcttgtgacagttaaaacattcagattttgacttgttaccactct 20505360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 23666215 - 23666168
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    ||||||| || ||||||||||||||| ||||||||||||| |||||||    
T  23666215 ccatcttatgacagttaaagcattcaaaccttgacttgtttccactct 23666168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 31543902 - 31543855
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||| | ||||||||||||||| ||||||||||||| |||||||    
T  31543902 ccatcttgcgacagttaaagcattcaaaccttgacttgtttccactct 31543855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1899 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: scaffold1899
Description:

Target: scaffold1899; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 949 - 811
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  949 caccgctccactaggcatcaatctcaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 850  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||||||||||||||||| |||||||||    
T  849 agagacaatttgtgcggagttaccattaacctccggaca 811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1899; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 793 - 746
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| || ||||||||||||||||||    
T  793 ccatcttgtgacagttaaagcattcaaactttgacttgttaccactct 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 26067349 - 26067487
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  26067349 caccgctccagtaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 26067448  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||| |||||||||||||||||||||||||||||||||    
T  26067449 agagataatttgtgcggagttaccattaatctccggaca 26067487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 33310214 - 33310076
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||||||    
T  33310214 caccactccactaggcatcaatcccaaggtgagacacatcaccttcttcttcctccaaacaacaccacaccatcagagcacccgtatcctcataaccctc 33310115  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||| ||||||||||||||||||||    
T  33310114 agagacaatttgtgcggaattaccattaatctccggaca 33310076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 15533892 - 15533983
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||||||||||||||||||||| || |||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  15533892 caccgctccactaggcatcactctcatggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctca 15533983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 3631233 - 3631324
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| || ||||||||    
T  3631233 caccgctccactaggcatcacccccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcatccacatcctca 3631324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 3395301 - 3395260
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcac 62  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  3395301 caccgctccactaggcatcattcccaaggtgagacacatcac 3395260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 26944514 - 26944465
Alignment:
Q  20 acaccgctccactaggcatcactcccaaggtgagacacatcaccatcttc 69  Q
    ||||||||| ||||||||||||||||||||||| | |||||||| |||||    
T  26944514 acaccgctctactaggcatcactcccaaggtgaaaaacatcaccttcttc 26944465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 26067505 - 26067552
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||| ||||||||| ||||||||||||| |||||||    
T  26067505 ccatcttgtgacagttgaagcattcaaaccttgacttgtttccactct 26067552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 33310058 - 33310011
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| || |||||||||| |||||||    
T  33310058 ccatcttgtgacagttaaagcattcaaacattgacttgtttccactct 33310011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 21519647 - 21519786
Alignment:
Q  20 acaccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccct 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||    
T  21519647 acaccgctctactaggcatcactcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacctgcatcctcataaccct 21519746  T
Q  120 ctgagacaatttgtgcggagttaccattaatctccggaca 159  Q
    | |||||||||||||||||||||||| |||| ||| ||||    
T  21519747 cagagacaatttgtgcggagttaccaataatatccagaca 21519786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 19503294 - 19503428
Alignment:
Q  25 gctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctctgag 124  Q
    |||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  19503294 gctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacctgcatcctcataaccctcagag 19503393  T
Q  125 acaatttgtgcggagttaccattaatctccggaca 159  Q
    |||||||||| |||||||||||||||||| |||||    
T  19503394 acaatttgtgtggagttaccattaatctctggaca 19503428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 35216924 - 35217062
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    ||||||| |||||||||||| |||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  35216924 caccgcttcactaggcatcaatcccaaggtgagacacatcacctttttcttcctccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 35217023  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     ||||||||||||||||| ||||||||||||| ||||||    
T  35217024 agagacaatttgtgcggaattaccattaatcttcggaca 35217062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 36560098 - 36560223
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||| |||||||| ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  36560098 caccgctccactaggcatcaatcccaaggcgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatgctcataaccctc 36560197  T
Q  121 tgagacaatttgtgcggagttaccat 146  Q
     |||||||||||||||||| ||||||    
T  36560198 agagacaatttgtgcggagctaccat 36560223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 31734169 - 31734260
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||||||||||||||||||| ||||||||||||| |||||||| ||||  || |||||||||||||||||||||||||||||||||| ||||    
T  31734169 caccgctccactaggcatcattcccaaggtgagaaacatcaccttctttatcctccaaacaacaccacaccatcagagcacccgcattctca 31734260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 6263444 - 6263535
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||| |||||| ||| |||| ||||||||||||  |||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||    
T  6263444 caccactccaccaggtatcaatcccaaggtgagggacatcaccttcttcatcctccaaacaacgccacaccatcagagcacccgcatcctca 6263535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 28569392 - 28569512
Alignment:
Q  36 catcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctctgagacaatttgtgc 135  Q
    ||||| || |||||||||| |||||||| ||||| ||| || ||| | ||   ||||||| |||||| | |||||||||| | || ||||| ||||||||    
T  28569392 catcattcacaaggtgagaaacatcaccttcttcatcaccccaacgagac---accatcaaagcacctgaatcctcataatcttcggagacgatttgtgc 28569488  T
Q  136 ggagttaccattaatctccggaca 159  Q
    ||||||||||||  ||||||||||    
T  28569489 ggagttaccattgttctccggaca 28569512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 19503446 - 19503493
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  19503446 ccatcttgtgacagttaaagcattcaaaccttgacttgtttccactct 19503493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 35217080 - 35217127
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  35217080 ccatcttgtgacagttaaagcattcaaaccttgacttgtttccactct 35217127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 21519804 - 21519844
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgtta 239  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  21519804 ccatcttgtgacagttaaagcattcagactttgacttgtta 21519844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 34883 - 34745
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||| || |||||||||| |||||||||||||||||| |||||||||||||||||    
T  34883 caccgctccactaggcatcactcccaacgtgagacacatcaccttcttcatcctccaaacaacgccacaccatcagagcacctgcatcctcataaccctc 34784  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||| ||||||||||||||||| |||||    
T  34783 agagacaatttgtgcagagttaccattaatctctggaca 34745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 34727 - 34680
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||  ||| ||||||||||||||||||    
T  34727 ccatcttgtgacagttaaagcattatgactttgacttgttaccactct 34680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 72468 - 72606
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctcataaccctc 120  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||| || |||||||||||||||||||||| |||||  | |||||||||||||||    
T  72468 caccgctccactaggcatccatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcaaagcacaagaatcctcataaccctc 72567  T
Q  121 tgagacaatttgtgcggagttaccattaatctccggaca 159  Q
     |||||||||||||||||||||||| |||| ||| ||||    
T  72568 agagacaatttgtgcggagttaccaataatatccagaca 72606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 72624 - 72671
Alignment:
Q  199 ccatcttgtggcagttaaagcattcagaccttgacttgttaccactct 246  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  72624 ccatcttgtgacagttaaagcattcagactttgacttgttaccactct 72671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 741 - 833
Alignment:
Q  20 acaccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  741 acaccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagagcacccgcatcctca 833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 51007 - 50916
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||    
T  51007 caccgctccactaggcatcactcccaaggtgagacacatcaccttcttcatcctcgaaacaacaccacaccatcagagcacccgcatcctca 50916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 80855 - 80764
Alignment:
Q  21 caccgctccactaggcatcactcccaaggtgagacacatcaccatcttcgtcatccaaacaacaccacaccatcagagcacccgcatcctca 112  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||| ||||||||||||||    
T  80855 caccgctccactaggcatcaatcccaaggtgagacacatcaccttcttcatcctccaaacaacaccacaccatcagaacacccgcatcctca 80764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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