View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4957_low_3 (Length: 524)
Name: NF4957_low_3
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4957_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 779981 - 779672
Alignment:
| Q |
19 |
tctatgatgtctaacatgtgtcggacaaattaaatgtgataagttcaataaactcattcgcttattaatttttacgtgtcttaagtccgtaacggtgttt |
118 |
Q |
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| T |
779981 |
tctatgatgtctaacatgtgtcggacaact-----gtgataagttcaataaactcattcgcttattaatttttacgtgtcttaagtccgtaacagtgttt |
779887 |
T |
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| Q |
119 |
catagatcattatcctattgactatgactctccattacaat-nnnnnnnccatgaaattaataaacaactaacattctcagctcaagaattagtatcaaa |
217 |
Q |
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| T |
779886 |
catagatcattatcctattgactatgactctccattacaataaaacaaaccatgaaattaataaacaactaacattctcagctcaagaattagtatcaaa |
779787 |
T |
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| Q |
218 |
actcatgttataatcatataaaaatgtcaaacagacacaattattatcattcatnnnnnnnnnnttcaaaaatactcaacaagacatcaataacacaagg |
317 |
Q |
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| T |
779786 |
actcatgttataatcatataaaaatgtcaaacagacacaattgttatcattcat-aaaaaaacattctaaaatactcaacaagacatcaataacacaagg |
779688 |
T |
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| Q |
318 |
atcatgactaatagtt |
333 |
Q |
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|||||||||||||||| |
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| T |
779687 |
atcatgactaatagtt |
779672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 395 - 487
Target Start/End: Complemental strand, 779610 - 779518
Alignment:
| Q |
395 |
gctagggcaaagaatgaaattcgttattttcttacctgctaagccactttccccatccttcttctccgtcccaaccccggacttctcatcgtt |
487 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
779610 |
gctagggcaaagaatgaaattcgttattttcttacctgctaagccactttccccatccttcttctccgtcccaaccccggacttctcatcgtt |
779518 |
T |
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