View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4957_low_6 (Length: 429)

Name: NF4957_low_6
Description: NF4957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4957_low_6
NF4957_low_6
[»] chr6 (2 HSPs)
chr6 (22-249)||(34355843-34356069)
chr6 (283-423)||(34356105-34356245)
[»] chr2 (10 HSPs)
chr2 (42-219)||(27268007-27268185)
chr2 (22-213)||(36641209-36641400)
chr2 (42-219)||(16206383-16206560)
chr2 (46-219)||(23379717-23379886)
chr2 (42-151)||(20661105-20661214)
chr2 (90-225)||(2058546-2058681)
chr2 (42-146)||(44886212-44886316)
chr2 (42-231)||(23761494-23761682)
chr2 (42-231)||(23789638-23789826)
chr2 (42-146)||(23762627-23762730)
[»] chr5 (6 HSPs)
chr5 (42-213)||(19741649-19741820)
chr5 (46-219)||(34920052-34920225)
chr5 (25-213)||(2157879-2158067)
chr5 (42-219)||(22292223-22292400)
chr5 (46-118)||(21092152-21092224)
chr5 (42-118)||(28246202-28246278)
[»] chr8 (5 HSPs)
chr8 (42-228)||(14657825-14658011)
chr8 (42-219)||(15990529-15990706)
chr8 (42-118)||(1186490-1186566)
chr8 (42-117)||(14505667-14505742)
chr8 (42-180)||(19299140-19299278)
[»] chr1 (9 HSPs)
chr1 (42-213)||(41117039-41117210)
chr1 (101-213)||(49372174-49372286)
chr1 (46-229)||(24427618-24427785)
chr1 (42-180)||(40490133-40490271)
chr1 (41-147)||(52147827-52147933)
chr1 (42-219)||(30033426-30033603)
chr1 (42-146)||(9361684-9361788)
chr1 (42-117)||(21701592-21701667)
chr1 (42-146)||(24083292-24083396)
[»] chr3 (12 HSPs)
chr3 (42-219)||(38015181-38015358)
chr3 (42-213)||(16739549-16739720)
chr3 (42-219)||(6006154-6006331)
chr3 (42-117)||(17790098-17790173)
chr3 (42-117)||(19098540-19098615)
chr3 (42-117)||(31809108-31809183)
chr3 (42-118)||(53437481-53437557)
chr3 (46-141)||(53394757-53394852)
chr3 (42-228)||(49643731-49643917)
chr3 (42-219)||(31228082-31228259)
chr3 (42-98)||(31661092-31661148)
chr3 (42-98)||(31935205-31935261)
[»] chr4 (8 HSPs)
chr4 (44-228)||(16582459-16582643)
chr4 (42-228)||(20527898-20528084)
chr4 (42-219)||(30859207-30859384)
chr4 (42-118)||(55227557-55227633)
chr4 (22-219)||(30191046-30191243)
chr4 (22-94)||(16431454-16431526)
chr4 (42-117)||(4235259-4235334)
chr4 (42-180)||(54823552-54823690)
[»] chr7 (7 HSPs)
chr7 (42-213)||(15633079-15633250)
chr7 (42-228)||(11342928-11343113)
chr7 (22-213)||(13015062-13015253)
chr7 (42-117)||(41601379-41601454)
chr7 (42-116)||(32480162-32480236)
chr7 (170-228)||(3205378-3205436)
chr7 (42-146)||(17238792-17238896)
[»] scaffold0011 (1 HSPs)
scaffold0011 (42-146)||(191123-191227)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 34355843 - 34356069
Alignment:
Q  22 aacctcgttggctttttgaataacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaac 121  Q
    |||||||||||||||| | |||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||  |    
T  34355843 aacctcgttggcttttcgcataacaaacttcaccctagagttaaaaaataaagaagtaaacaaagaacgacaagaagaaataatgcaaccaaattcgg-c 34355941  T
Q  122 gtgtcattcctattagaaagaaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccg 221  Q
     |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34355942 atgtcgttcctattagaaagaaaagtatcagaaatcagcttagactccgtttcaaaatttacactatcaaattgtatgtcactcaaccattgtaaagccg 34356041  T
Q  222 aatgcaagccggagcttaacaactatac 249  Q
    |||||||||| |||||||||||||||||    
T  34356042 aatgcaagccagagcttaacaactatac 34356069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 283 - 423
Target Start/End: Original strand, 34356105 - 34356245
Alignment:
Q  283 gagttaattacatagtatatctcttattcctttaaatcaagagttaagaggtttcctagactttttgacctgtcaatgtaattttcctttaaatcaagag 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  34356105 gagttaattacatagtatatctcttattcctttaaatcaagagttaaaaggtttcctagaatttttgacctgtcaatgtaattttcgtttaaatcaagag 34356204  T
Q  383 ttaagatgctaaatatttccttggttcattatattcttcga 423  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  34356205 ttaagatgccaaatatttccttggttcattatatttttcga 34356245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 27268007 - 27268185
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgc-aaccaaattcgaacgtgtcattcctattagaaa 140  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || | ||| |    
T  27268007 taacaaactccaccctagagttagaaaataaagaaataaacaaagaatgacaagaagaaataatgcaaaccaaattcggacgtgtcatttctgtcagaga 27268106  T
Q  141 gaaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 219  Q
    |||||| ||||||  ||| |||||| |||||||||||||| ||| ||||||| |  |||||||| |||||||| |||||    
T  27268107 gaaaagcatcagacgtcaacttaaaatccgtttcaaaatccacattatcaaacttcatgtcacttaaccattgcaaagc 27268185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 36641400 - 36641209
Alignment:
Q  22 aacctcgttggctttttgaataacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaac 121  Q
    |||||||||||||| | |  ||||||||||||||| |||||| |||||| ||| | | ||||| ||| ||||||||||||||||||| ||||||||| |     
T  36641400 aacctcgttggcttgtcgcctaacaaactccacccgagagttgaaaaataaagcagtgaacaacgaacgacaagaagaaataatgcagccaaattcggat 36641301  T
Q  122 gtgtcattcctattagaaagaaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 213  Q
    ||||| ||||||| ||| ||||||| ||||| || ||  ||| | || ||||||||||| ||||||||||| || ||||| |||||||||||    
T  36641300 gtgtcgttcctatcagagagaaaagcatcagcaaacaatttagaatctgtttcaaaatccacactatcaaactgcatgtcgctcaaccattg 36641209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 16206560 - 16206383
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||||  ||| ||| ||||||||| |||| || ||||||||||| ||||||||| ||  ||| || ||| |||||||    
T  16206560 taacaaactccaccctagagttagaaaagaaagtaatgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaag 16206461  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 219  Q
     || |  ||||   ||| |||| | || ||||||||||| ||| | ||||| || || |||||||||||||| |||||    
T  16206460 gaaggcttcagctgtcaacttagagtctgtttcaaaatccacattgtcaaactgcatatcactcaaccattgcaaagc 16206383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 23379886 - 23379717
Alignment:
Q  46 aaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaagaaaa 145  Q
    ||||||||||||||||||  |||||  || | ||||||||||| ||||||||||   |||||||||||||||| | ||||| ||||| | || ||||||     
T  23379886 aaactccaccctagagttggaaaatacagcagtaaacaaagaacgacaagaaga---aatgcaaccaaattcggatgtgtcgttcctgtcag-aagaaag 23379791  T
Q  146 gtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 219  Q
    | ||||| |  ||  ||| | ||| |||| ||||| || ||||||||||| |||||||||||||| ||||||||    
T  23379790 gcatcagcagacaatttagaatccatttcgaaatccacgctatcaaattgcatgtcactcaaccactgtaaagc 23379717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 20661214 - 20661105
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    |||||||||||||||||||| || ||||| ||||  ||||  ||||| ||||||||| |||||||||||| |||||  || | |||||| | || || ||    
T  20661214 taacaaactccaccctagaggtagaaaataaagagttaaaataagaacgacaagaagtaataatgcaaccgaattcagacatttcattcttgtttgagag 20661115  T
Q  142 aaaagtatca 151  Q
    ||||||||||    
T  20661114 aaaagtatca 20661105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 225
Target Start/End: Complemental strand, 2058681 - 2058546
Alignment:
Q  90 gacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaagaaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatc 189  Q
    ||||||| ||||||||| ||||||||||  | |||||||| ||| |||| ||||||| ||||||  | |  ||| | |||||||||||||| || |||||    
T  2058681 gacaagatgaaataatggaaccaaattcagatgtgtcatttctagtagacagaaaagcatcagatgtgactttagagtccgtttcaaaatccacgctatc 2058582  T
Q  190 aaattgtatgtcactcaaccattgtaaagccgaatg 225  Q
     || || || ||||| | |||||| |||||||||||    
T  2058581 gaactgcatatcacttagccattgcaaagccgaatg 2058546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 44886316 - 44886212
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||||  ||||| |||| |   || ||||||| ||||||||  | ||||||||| | ||||| |||||| |||| ||    
T  44886316 taacaaactccaccctagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaataatagagccaaattcggatgtgtcgttcctagtagacag 44886217  T
Q  142 aaaag 146  Q
    |||||    
T  44886216 aaaag 44886212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 23761494 - 23761682
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    |||||||||||||| ||||||||| |||   |||| |||| |||||| || |||| |||||||| |||||||||||  | ||||| |||||| |||| |     
T  23761494 taacaaactccacc-tagagttaacaaaagtagaactaaataaagaacgataagaggaaataatacaaccaaattcagatgtgtcgttcctagtagacaa 23761592  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaagcc 231  Q
     |||| |||     |||||||| | || ||||| || || ||| ||||||| || || |||   ||||||||||||||||| ||||||||    
T  23761593 caaagcatccaccgtcagcttagagtctgtttcgaagtccacattatcaaagtgcatatcatcaaaccattgtaaagccgagtgcaagcc 23761682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 23789638 - 23789826
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    |||||||||||||| ||||||||| |||   |||| |||| |||||| || |||| |||||||| |||||||||||  | ||||| |||||| |||| |     
T  23789638 taacaaactccacc-tagagttaacaaaagtagaactaaataaagaacgataagaggaaataatacaaccaaattcagatgtgtcgttcctagtagacaa 23789736  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaagcc 231  Q
     |||| |||     |||||||| | || ||||| || || ||| ||||||| || || |||   ||||||||||||||||| ||||||||    
T  23789737 caaagcatccaccgtcagcttagagtctgtttcgaagtccacattatcaaagtgcatatcatcaaaccattgtaaagccgagtgcaagcc 23789826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 23762627 - 23762730
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    |||||||||||||| ||||||||| |||   |||| |||| |||||| ||||||| |||||||| || ||||||||  |  |||| |||||| |||| ||    
T  23762627 taacaaactccacc-tagagttaacaaaagtagaactaaataaagaacgacaagaggaaataatacagccaaattcagatttgtcgttcctagtagacag 23762725  T
Q  142 aaaag 146  Q
    |||||    
T  23762726 aaaag 23762730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 42 - 213
Target Start/End: Original strand, 19741649 - 19741820
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||| | ||||||||||||  ||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| | ||| ||    
T  19741649 taacaaatttcaccctagagttggaaaataaagaagtaaacaaagaacgacaagaagaaataatgcagccaaattcggacgtgtcattcctgtcagagag 19741748  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 213  Q
    ||||| ||||||  ||| |||||| |||||||||||||||||| ||||||| || |||||||| ||||||||    
T  19741749 aaaagcatcagacgtcaacttaaaatccgtttcaaaatctacattatcaaactgcatgtcacttaaccattg 19741820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 34920052 - 34920225
Alignment:
Q  46 aaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaagaaaa 145  Q
    |||||| |||||||||||| ||||| ||||  ||||||||||| ||||||||| ||||||||||||||||||  | ||||||||||| | | | ||||||    
T  34920052 aaactctaccctagagttagaaaataaagagttaaacaaagaacgacaagaagtaataatgcaaccaaattcagaagtgtcattcctgtcatagagaaaa 34920151  T
Q  146 gtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 219  Q
    | ||||    |||  ||||| |||||||||||||| ||| ||||||| || || ||||| | |||||| |||||    
T  34920152 gcatcaaccgtcaaattaaaatccgtttcaaaatccacattatcaaactgcatatcactgagccattgcaaagc 34920225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 2157879 - 2158067
Alignment:
Q  25 ctcgttggctttttgaataacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtg 124  Q
    ||||||||||| | |  ||||||||||||||| ||||||  ||||| ||| |   ||||| ||| ||||||||||||||||||| ||||||||| | |||    
T  2157879 ctcgttggcttgtcgcctaacaaactccacccgagagttggaaaataaaggagggaacaacgaacgacaagaagaaataatgcagccaaattcggatgtg 2157978  T
Q  125 tcattcctattagaaagaaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 213  Q
    |||||||| |  || ||||||| ||||| |  ||  ||| | || ||||| ||||| ||||||||||| || ||||| |||||||||||    
T  2157979 tcattcctgtcggagagaaaagcatcagcagacaatttagaatctgtttcgaaatccacactatcaaactgcatgtcgctcaaccattg 2158067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 22292400 - 22292223
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| ||||||||| ||  ||| || ||| |||||||    
T  22292400 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaag 22292301  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 219  Q
     || |  ||||   ||| |||| | || ||||| ||||| ||| | ||||| || || |||||||||||||| |||||    
T  22292300 gaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagc 22292223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 21092224 - 21092152
Alignment:
Q  46 aaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcg 118  Q
    ||||||||||||||||||| | ||  | | | ||||||||||| ||||||| ||||||||||| |||||||||    
T  21092224 aaactccaccctagagttagagaaaaaggtactaaacaaagaacgacaagatgaaataatgcagccaaattcg 21092152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 28246278 - 28246202
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcg 118  Q
    |||||||||||| |||||||||| ||||  ||| | | |||||||||  ||| || ||||||||||| |||||||||    
T  28246278 taacaaactccatcctagagttagaaaagaaagtattgaacaaagaacaacaggaggaaataatgcagccaaattcg 28246202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 14657825 - 14658011
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||| | || || |||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| | ||| ||    
T  14657825 taacaaactccaccctagagttagaaactaaataagtaaacaaataatgacaagaagaaataatgcaaccaaattcggacgtgtcgttcctgtcagagag 14657924  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaa 228  Q
    ||||| ||||||  |||||||| | |||||||||||||| || |||||||| |  | |||||||||||| ||||| ||||| |||||    
T  14657925 aaaagcatcagacgtcagcttagaatccgtttcaaaatccacgctatcaaactacaagtcactcaaccactgtaatgccgagtgcaa 14658011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 15990529 - 15990706
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||||  ||| ||| ||||||||| |||| || ||||||||||| ||||||||| ||  ||| || ||| |||||||    
T  15990529 taacaaactccaccctagagttagaaaagaaagtaatgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaag 15990628  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 219  Q
     || |  ||||   ||| |||| | || ||||||||||| | | | ||||| || || |||||||||||||| |||||    
T  15990629 gaaggcttcagctgtcaacttagagtctgtttcaaaatccaaattgtcaaactgcatatcactcaaccattgcaaagc 15990706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 1186566 - 1186490
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcg 118  Q
    ||||||||||||||||||||||| ||||| ||| |   || |||||| |||| || |||||||||||||||||||||    
T  1186566 taacaaactccaccctagagttagaaaatgaagtacagaataaagaacgacaggaggaaataatgcaaccaaattcg 1186490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 14505742 - 14505667
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 117  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| ||||||||    
T  14505742 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattc 14505667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 180
Target Start/End: Original strand, 19299140 - 19299278
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||| ||||||||||||| ||||  |||   | ||||||||| |||| || |||||||| || | ||||| | ||  |||||||||| |||||||    
T  19299140 taacaaacttcaccctagagttagaaaagaaagtgctgaacaaagaacgacaggaggaaataatacagctaaatttggacaagtcattcctagtagaaag 19299239  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatc 180  Q
     |||| |||||  |||| |||| | || |||||||||||    
T  19299240 gaaagcatcagctatcaacttagagtctgtttcaaaatc 19299278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 41117210 - 41117039
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||| ||||||  ||||| ||| | ||||||| ||| ||||||||||||||||||| ||||||||| | ||||| ||||| | ||| ||    
T  41117210 taacaaactccacccgagagttggaaaataaagcagtaaacaacgaacgacaagaagaaataatgcagccaaattcggatgtgtcgttcctgtcagagag 41117111  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 213  Q
    ||||| ||||| || || |||| | || ||||| ||||| || |||||||| || ||||| |||||||||||    
T  41117110 aaaagcatcagcaaacaacttagaatctgtttcgaaatcgacgctatcaaactgcatgtcgctcaaccattg 41117039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 49372286 - 49372174
Alignment:
Q  101 ataatgcaaccaaattcgaacgtgtcattcctattagaaagaaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgt 200  Q
    |||||||||||||||||| |||||||||| || | ||| ||||||| ||||||  ||| |||| | || ||||||||||| ||| |||||||||| ||||    
T  49372286 ataatgcaaccaaattcggacgtgtcatttctgtcagagagaaaagcatcagacgtcaacttagaatctgtttcaaaatccacattatcaaattgcatgt 49372187  T
Q  201 cactcaaccattg 213  Q
    |||| ||||||||    
T  49372186 cacttaaccattg 49372174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 24427618 - 24427785
Alignment:
Q  46 aaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaagaaaa 145  Q
    |||||| |||||||||||| ||||| ||||| |||||||||||  |||||||||||||||| ||||||||||  || |                ||||||    
T  24427618 aaactcgaccctagagttagaaaataaagaagtaaacaaagaacaacaagaagaaataatgaaaccaaattcagacat----------------agaaaa 24427701  T
Q  146 gtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaag 229  Q
    | ||||||| ||||||||    ||||||||||||| || ||||||||||| |||||||||||||||| ||||||| ||||||||    
T  24427702 gcatcagaagtcagcttaggacccgtttcaaaatccacgctatcaaattgcatgtcactcaaccattataaagccaaatgcaag 24427785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 180
Target Start/End: Original strand, 40490133 - 40490271
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||||  | ||  |||| |||||| |||| || ||||| || || ||||||||||| ||||| |||||| ||| |||    
T  40490133 taacaaactccaccctagagttagaaaagaatgagctaaataaagaacgacatgaggaaatgatacagccaaattcgaaagtgtcgttcctagtagcaag 40490232  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatc 180  Q
    ||||| |||| |  |||||||| | ||||||||||||||    
T  40490233 aaaagcatcatatgtcagcttagagtccgtttcaaaatc 40490271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 52147827 - 52147933
Alignment:
Q  41 ataacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaa 140  Q
    |||||||||| |||| |||||||  ||||| ||| | |||||||||||  |||||||||||||||||| || |||||| ||||||||||||| | ||| |    
T  52147827 ataacaaacttcaccttagagttggaaaataaagcagtaaacaaagaacaacaagaagaaataatgcagccgaattcggacgtgtcattcctgtcagaga 52147926  T
Q  141 gaaaagt 147  Q
    |||||||    
T  52147927 gaaaagt 52147933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 30033603 - 30033426
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| ||||||||| ||  ||| || ||| |||||||    
T  30033603 taacaaactccaccctagagttagaaaagaaagtattgaacaaagaacgacatgaggaaataatgcatccaaattcggacaagtcgtttctagtagaaag 30033504  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 219  Q
     || |  ||||   ||| |||| | || ||||| ||||| ||| | |||||||| || |||||||||||||| |||||    
T  30033503 gaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaattgcatatcactcaaccattgcaaagc 30033426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 9361788 - 9361684
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||||  ||||| |||| |   || ||||||| ||||||||  | ||||||||||| ||| | |||||| |||| ||    
T  9361788 taacaaactccaccctagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaataatagagccaaattcgaatgtgccgttcctagtagacag 9361689  T
Q  142 aaaag 146  Q
    |||||    
T  9361688 aaaag 9361684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 21701592 - 21701667
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 117  Q
    ||||||||||||||||||||||| ||||| ||  |  |||||| ||| |||| |||||||||||  ||||||||||    
T  21701592 taacaaactccaccctagagttagaaaataaattacgaaacaacgaacgacaggaagaaataatagaaccaaattc 21701667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 24083396 - 24083292
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    |||||||||||||| |||||||| ||||  ||||| |||| |   || ||||||| |||||| |  ||||||||||| | ||||| |||||| |||| ||    
T  24083396 taacaaactccaccgtagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaatagtagaaccaaattcggatgtgtcgttcctagtagatag 24083297  T
Q  142 aaaag 146  Q
    |||||    
T  24083296 aaaag 24083292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 38015181 - 38015358
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    |||||||||||||| |||||||| ||||| ||||  ||||||||||| ||||| ||| ||||||||||||||||||  ||||||  ||| | | ||| ||    
T  38015181 taacaaactccaccatagagttagaaaataaagagttaaacaaagaacgacaataagtaataatgcaaccaaattcacacgtgttgttcttgtcagagag 38015280  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 219  Q
    ||||| |||||   ||| |||| | | |||||||||||| ||| ||||||| || |||||||| | ||||||||||||    
T  38015281 aaaagcatcagccgtcaacttagaattcgtttcaaaatccacattatcaaactgcatgtcactgagccattgtaaagc 38015358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 42 - 213
Target Start/End: Original strand, 16739549 - 16739720
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||| ||||||  ||||| ||| | | ||||| ||| ||||||||||||||||||| ||||||||| | ||||| ||||| |  || ||    
T  16739549 taacaaactccacccgagagttggaaaataaagtagtgaacaacgaacgacaagaagaaataatgcagccaaattcggatgtgtctttcctgtcggagag 16739648  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 213  Q
    ||||| ||||| |  ||  ||| | || ||||| ||||| ||||||||||| |  ||||| |||||||||||    
T  16739649 aaaagcatcagcagacaatttagaatctgtttcgaaatccacactatcaaacttcatgtcgctcaaccattg 16739720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 6006154 - 6006331
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| |||| |||| ||  ||| || ||| |||||||    
T  6006154 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacatgaggaaataatgcatccaagttcggacaagtcgtttctagtagaaag 6006253  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 219  Q
     || |  ||||   ||| |||| | || ||||| ||||| ||| | |||||||| || |||||||||||||| |||||    
T  6006254 gaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaattgcatatcactcaaccattgcaaagc 6006331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 17790173 - 17790098
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 117  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| ||||||||    
T  17790173 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattc 17790098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 19098615 - 19098540
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 117  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| ||||||||    
T  19098615 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattc 19098540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 31809183 - 31809108
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 117  Q
    ||||||||||||||||||||||  ||||| ||  |  |||||||||| ||||||||||||||||  ||||||||||    
T  31809183 taacaaactccaccctagagttggaaaataaattacgaaacaaagaacgacaagaagaaataatagaaccaaattc 31809108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 53437557 - 53437481
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcg 118  Q
    ||||||||||||||||||||||| ||||  |||   | ||||| ||| | ||||| |||||||||||||||||||||    
T  53437557 taacaaactccaccctagagttagaaaagaaagtgctgaacaacgaacggcaagaggaaataatgcaaccaaattcg 53437481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 53394852 - 53394757
Alignment:
Q  46 aaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||| ||||  ||    | ||||| ||| ||||||| ||||||||||||||||||||| ||  |||||||||  |||||||    
T  53394852 aaactccaccctagagttagaaaagaaactgctgaacaacgaacgacaagaggaaataatgcaaccaaattcggacaagtcattcctgctagaaag 53394757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 49643917 - 49643731
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||| ||||| ||||| ||||| |||| |   || ||||||| ||||||||  |  |||||||| | ||||| |||||| |||| ||    
T  49643917 taacaaactccaccctatagttagaaaataaagaactaaaaagcaaacgacaagatgaaataatagagtcaaattcggatgtgtcgttcctagtagacag 49643818  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaa 228  Q
    |||||  || ||  |||||||  | || ||||||||||| |||| ||| |  || || ||||| | |||||||| |||||| |||||    
T  49643817 aaaagcgtctgatgtcagcttcgaatcagtttcaaaatccacaccatccatctgcatatcacttagccattgtagagccgagtgcaa 49643731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 31228259 - 31228082
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||||  ||| | | || |||||| |||  || ||||||||||| ||||||||| ||  ||| || ||| |||||||    
T  31228259 taacaaactccaccctagagttagaaaagaaagtactgaataaagaacgacgggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaag 31228160  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 219  Q
     || |  ||||   ||| |||| | || ||||| ||||| ||| | ||||| || || |||||||||||||| |||||    
T  31228159 gaaggcttcagttgtcaacttagagtctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagc 31228082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 31661092 - 31661148
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaag 98  Q
    ||||||||||||||||||||||| ||||| ||  |  |||||||||| |||||||||    
T  31661092 taacaaactccaccctagagttagaaaataaattacgaaacaaagaacgacaagaag 31661148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 31935261 - 31935205
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaag 98  Q
    ||||||||||||||||||||||| ||||| ||  |  |||||||||| |||||||||    
T  31935261 taacaaactccaccctagagttagaaaataaattacgaaacaaagaacgacaagaag 31935205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 228
Target Start/End: Original strand, 16582459 - 16582643
Alignment:
Q  44 acaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaagaa 143  Q
    ||||||||||||||| ||||  ||||| ||  | |||||||| || |||||||||||||||| || ||||||||| | ||||| ||||| |  |||||||    
T  16582459 acaaactccaccctaaagttggaaaataaaacagtaaacaaataacgacaagaagaaataatacagccaaattcggatgtgtcgttcctgtcggaaagaa 16582558  T
Q  144 aagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaa 228  Q
    ||| |||||||  ||  ||| | ||| |||||||||| || |||||||| || || || ||||||||||||||||| ||||||||    
T  16582559 aagcatcagaagacaatttagaatccatttcaaaatccacgctatcaaactgcatatcgctcaaccattgtaaagctgaatgcaa 16582643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 20527898 - 20528084
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    |||||||||||||||||||||||| |||   |||| |||| |||||| ||||||| |||||||| |||| |||||| || ||||| |||| | |||| ||    
T  20527898 taacaaactccaccctagagttaacaaaagtagaactaaataaagaacgacaagaggaaataatacaactaaattcaaatgtgtcgttccgagtagacag 20527997  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaa 228  Q
    ||||| ||||    |||||||| | |||||||| || || ||||||||||| || || |||  |||||| | ||||||||| |||||    
T  20527998 aaaagcatcaatcgtcagcttagagtccgtttcgaagtccacactatcaaaatgcatatcatccaaccactctaaagccgagtgcaa 20528084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 30859384 - 30859207
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| ||||||||| ||  ||| || ||| |||||||    
T  30859384 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacatgaggaaataatgcatccaaattcggacaagtcgtttctagtagaaag 30859285  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 219  Q
     || |  ||||   ||| |||| | || ||||| ||||| ||| | |||||||| || |||||||||||||| |||||    
T  30859284 gaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaattgcatatcactcaaccattgcaaagc 30859207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 55227633 - 55227557
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcg 118  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| |||||||||    
T  55227633 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcg 55227557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 30191046 - 30191243
Alignment:
Q  22 aacctcgttggctttttgaataacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaac 121  Q
    |||| ||||||||| |||  ||||||||||||||||| ||||| ||||  ||| | | ||||||||| |||| ||  |||||||||| ||||||||| ||    
T  30191046 aaccacgttggcttgttgcctaacaaactccaccctaaagttagaaaaggaagtactgaacaaagaacgacaggagaaaataatgcagccaaattcggac 30191145  T
Q  122 gtgtcattcctattagaaagaaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagc 219  Q
      ||| ||| |  ||||||| || |  ||||   ||| |||| | || ||||||||||| ||| | ||||| || || |||||||||||||| |||||    
T  30191146 aagtcgttcatggtagaaaggaaggcgtcagctgtcaacttagagtctgtttcaaaatccacattgtcaaactgcatatcactcaaccattgcaaagc 30191243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 16431454 - 16431526
Alignment:
Q  22 aacctcgttggctttttgaataacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaa 94  Q
    ||||||||||| || | |  ||||||||||||||||||||||| ||||| || || ||||||||||| |||||    
T  16431454 aacctcgttggtttgtcgcctaacaaactccaccctagagttagaaaataaaaaagtaaacaaagaacgacaa 16431526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 4235334 - 4235259
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 117  Q
    ||||||||||||||||||||||| ||||| ||  |   ||||||||| ||||| ||||||||||  ||||||||||    
T  4235334 taacaaactccaccctagagttagaaaataaattatggaacaaagaacgacaaaaagaaataatagaaccaaattc 4235259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 180
Target Start/End: Complemental strand, 54823690 - 54823552
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||| ||||||||||||| ||||  |||   | ||||||||| |||| || |||||||| || | ||||| | ||  |||||||||| |||||||    
T  54823690 taacaaacttcaccctagagttagaaaagaaagtgctgaacaaagaacgacaggaggaaataatacagctaaatttggacaagtcattcctagtagaaag 54823591  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatc 180  Q
     |||| |||||  |||| |||| | || |||||||||||    
T  54823590 gaaagcatcagctatcaacttagagtctgtttcaaaatc 54823552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 15633250 - 15633079
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||| ||||||  ||||| ||| | | ||||| ||| ||||||||||||||||||| ||||||||| ||||||| ||||| |  || ||    
T  15633250 taacaaactccacccgagagttggaaaataaagcagtgaacaacgaacgacaagaagaaataatgcagccaaattcggacgtgtcgttcctgtcggagag 15633151  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 213  Q
    ||||| ||||| |  ||  ||| | || ||||| ||||| ||||||||||| || ||||| |||||||||||    
T  15633150 aaaagaatcagcagacaatttagaatctgtttcgaaatccacactatcaaactgcatgtcgctcaaccattg 15633079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 11343113 - 11342928
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    |||||||||||| | |||||||  ||||   |||| |||| ||||||  |||||||||| ||||||||||||||||| |||||||||| ||| ||||||     
T  11343113 taacaaactccatcatagagttggaaaaagtagaactaaataaagaacaacaagaagaa-taatgcaaccaaattcggacgtgtcatttctagtagaaat 11343015  T
Q  142 aaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaa 228  Q
     |||| |||||   | |||||| | |||||||||||||  ||||| |||||||| || | |||||||||||| || |||| ||||||    
T  11343014 gaaagcatcagttgttagcttagaatccgtttcaaaattcacactgtcaaattgcatattactcaaccattgcaaggccggatgcaa 11342928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 13015062 - 13015253
Alignment:
Q  22 aacctcgttggctttttgaataacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaac 121  Q
    |||||||||||||| | |  ||||||||| ||||| ||||||  ||||| ||| | | ||||| ||| ||||||||||||||||||| |||||| || |     
T  13015062 aacctcgttggcttgtcgcctaacaaactacacccgagagttggaaaataaagcagtgaacaatgaaagacaagaagaaataatgcagccaaatccggat 13015161  T
Q  122 gtgtcattcctattagaaagaaaagtatcagaaatcagcttaaactccgtttcaaaatctacactatcaaattgtatgtcactcaaccattg 213  Q
    ||||| ||||| |  || ||||||| ||||| |  ||  ||| | || ||||| ||||| ||||||||||| || ||||| |||||| ||||    
T  13015162 gtgtcgttcctgtcggagagaaaagcatcagcagacaatttagaatctgtttcgaaatccacactatcaaactgcatgtcgctcaactattg 13015253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 41601454 - 41601379
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattc 117  Q
    ||||||||||||||||||||||| ||||| ||  |  |||||||||| |||| |||||||||||  ||||||||||    
T  41601454 taacaaactccaccctagagttagaaaataaattacgaaacaaagaacgacaggaagaaataatagaaccaaattc 41601379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 32480236 - 32480162
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaatt 116  Q
    ||||||||||||||||||||||| ||||  ||| | | ||||||||| |||| || ||||||||||| |||||||    
T  32480236 taacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaatt 32480162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 3205378 - 3205436
Alignment:
Q  170 gtttcaaaatctacactatcaaattgtatgtcactcaaccattgtaaagccgaatgcaa 228  Q
    ||||||||||| ||| ||||||| || ||||||||||||||||||| | | ||||||||    
T  3205378 gtttcaaaatccacattatcaaactgcatgtcactcaaccattgtacaacagaatgcaa 3205436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 17238792 - 17238896
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||||  ||||| |||| |   || ||||||| ||||||||  | ||||||| | | ||||| |||||| |||| ||    
T  17238792 taacaaactccaccctagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaataatagagccaaatttggatgtgtcgttcctagtagacag 17238891  T
Q  142 aaaag 146  Q
    |||||    
T  17238892 aaaag 17238896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 191123 - 191227
Alignment:
Q  42 taacaaactccaccctagagttaaaaaatcaagaaataaacaaagaatgacaagaagaaataatgcaaccaaattcgaacgtgtcattcctattagaaag 141  Q
    ||||||||||||||||||||||| ||||  ||||| |||| |   || ||||||| ||||||||  | ||||||| | | ||||| |||||| |||| ||    
T  191123 taacaaactccaccctagagttagaaaagaaagaactaaaaagcaaacgacaagatgaaataatagagccaaatttggatgtgtcgttcctagtagacag 191222  T
Q  142 aaaag 146  Q
    |||||    
T  191223 aaaag 191227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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