View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4958-Insertion-1 (Length: 936)
Name: NF4958-Insertion-1
Description: NF4958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4958-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 608; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 8 - 714
Target Start/End: Complemental strand, 22554474 - 22553786
Alignment:
| Q |
8 |
aaattaatctctctttataacaagtcgggaactaatttgtcctcgagataaaattttcatgaacgaatttcggtattattttttgtaacgaactaaattg |
107 |
Q |
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| T |
22554474 |
aaattaatctctctttataacaagttgggaactaatttgtcctcgagataaaattttcatgaacgaatttcggtattattttttgtaacaaactaaattg |
22554375 |
T |
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| Q |
108 |
acatgcaagaaaattgtgaaagaccagatagatgttgagttaaaattnnnnnnnnntagtagcaagttacatttgtcacgtaacgtgtgatgatctaaga |
207 |
Q |
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| T |
22554374 |
acatgcaagaaaattgtgaaagaccaga-----gtt----taaaa---------aatagtagcaagttacatttgtcacgtaacgtgtgatgatctaaga |
22554293 |
T |
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| Q |
208 |
taaggtaaagggataagaaaatctgaaagaaatgtgaaagtaaacataaactgcaacaaaaaccctactttagtgctacaccaacatcagaagcaacaac |
307 |
Q |
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| T |
22554292 |
taaggtaaagggataagaaaatctgaaagaaatgtgaaagtaaacataaactgcaacaaaaaccctactttagtgctacaccaacatgagaagcaacaac |
22554193 |
T |
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| Q |
308 |
cataatcagaaacaacaataaaaacatgctatttataatatagttgaactaaaatctttcattcttcactcacttcaaaacttcccttaataataacaac |
407 |
Q |
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| T |
22554192 |
cataatcagaaacaacaataaaaacatgctatttataatatagttgaactaaaatctttcattcttcactcacttcaaaacttcccttaataataacaac |
22554093 |
T |
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| Q |
408 |
gatgttactgtgtgaactactttgatgttaataatggctactactacacgtgttccttttgtttctgctaccacattttttcctaaccaatgccataaat |
507 |
Q |
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| T |
22554092 |
gatgttactgtgtgaactactttgatgttaattatggctactactacacgtgttccttttgtttctgctaccacattttttcctaaccaatgccataaat |
22553993 |
T |
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| Q |
508 |
attcattggtggcaaggacaattaatttacctgtttcttctgcatcattaaggctttcttattgttattctacttcattggtttcacttgcattaccaag |
607 |
Q |
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| T |
22553992 |
attcattggtggcaaggacaattaatttacctgtttcttctacatcattaaggctttcttcttgttattctacttcattggtttcacttgcattaccaag |
22553893 |
T |
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| Q |
608 |
gagttttaagagaggtggaaatagaagaagtgttgttgttgttgctatggctgagtcttcaaagagtactgtgcttgttactggtgctggtggtcgtaca |
707 |
Q |
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| T |
22553892 |
gagttttaagagaggtggaaatagaagaagtgttgttgttgttgctatggctgagtcttcaaagagtactgtgcttgttactggtgctggtggtcgtaca |
22553793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 800 - 927
Target Start/End: Complemental strand, 22553732 - 22553605
Alignment:
| Q |
800 |
tagaaaatgacatttcatgtttttcttcttcttcttgattttgttattgaaatttgtgaaaatataggaatataaatgcaggttttgtagatttcattgg |
899 |
Q |
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||||||||||||||||||||||| || | |||||||||||| | |||||| |||| ||| |||||||| |||||| ||| ||| | |||||||| | |
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| T |
22553732 |
tagaaaatgacatttcatgttttgtttttgtttcttgattttgctgctgaaatgtgtgtaaacataggaatttaaatgtagggtttctggatttcatgag |
22553633 |
T |
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| Q |
900 |
agtaatatgagttttaattaaggtttag |
927 |
Q |
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| T |
22553632 |
agttatatgagttttaatttaggtttag |
22553605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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