View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4958-Insertion-2 (Length: 829)
Name: NF4958-Insertion-2
Description: NF4958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4958-Insertion-2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 397 - 829
Target Start/End: Original strand, 34607620 - 34608050
Alignment:
| Q |
397 |
cgaacttagagcaagggctgagccttctccagcaaagacaaagatgcaagttgagaaaaattcagctacggttgctcttatggaatctggatgatttgcc |
496 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34607620 |
cgaacttagagcaagggctgagccttctccagcaaatacaaagatgcaagttgagaaaaattcagctacggttgctcttatggaatctggatgatttgcc |
34607719 |
T |
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| Q |
497 |
tcatccatccttccaaatgcatatcttctagttgccattgaaagatttaattatagtcaaagacactctcttttaggtttttgagaccgggatccagaat |
596 |
Q |
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| T |
34607720 |
tcatccatccttccaaatgcatatcttctagttgccattgaaagatttaattatagtc----------tcttttagatgtttgagaccgggatccagaat |
34607809 |
T |
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| Q |
597 |
attcaacaaca---caactaatttaatgtgactatgaatgaatgatgcaaagtttattagactttattagatt-----ggcaattttgcatggatgaaaa |
688 |
Q |
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| T |
34607810 |
attcaacaacaacacaactaatttaatgtgactatgaatgaatgatgaaaagtttattagacttgattagattatattggcaattttgcatggatgaaaa |
34607909 |
T |
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| Q |
689 |
gtgtagggtgttgcattatatgagccaaatagaggttgaattgatcgaagctataggtggaagtaggacacctggtttttgaaatgttgcaaggtagcca |
788 |
Q |
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| T |
34607910 |
gtgtagggtgttgcattatatgagccaaatagaggttgaattgatcgaagctataggtggaagtaggacacctggtttgtgaaatgttgcaaggtagcca |
34608009 |
T |
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| Q |
789 |
cgtcgctatataagatgatgactactcactttcatttttgg |
829 |
Q |
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| T |
34608010 |
cgtcgttatataagatgatgactactcactttcatttttgg |
34608050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 42 - 356
Target Start/End: Original strand, 34607267 - 34607581
Alignment:
| Q |
42 |
agaaatgagtatattatataccatgttattagtgacaagcctcaataagagggcagccacgaaagaaccaagaagttgagcaacccaatagtagacagct |
141 |
Q |
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| T |
34607267 |
agaaatgagtatattatataccatgttattagtgacaagcctcaataagagggcagccacgaaagaaccaagaagttgagcaacccaatagtagagagct |
34607366 |
T |
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| Q |
142 |
ctaaggacagagattctaccaccaagaagagcaccaaaagtaacagcagggtttatatgtccaccagatacatgcatgctagatgatatagctgcaaata |
241 |
Q |
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| T |
34607367 |
ctaaggacagagattctaccaccaagaagagcaccaaaagtaacagcagggtttatatgtccaccagatacatgcatgctagatgatatagctgcaaata |
34607466 |
T |
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| Q |
242 |
gtgaaaatgcatgagctagtgcaagtaccaatagctcaccagatgatgcacctgcatccttgtatatcttccctacaattcaaccaaccacacacaaatt |
341 |
Q |
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| T |
34607467 |
gtgaaaatgcatgagctattgcaagtaccaatagctcaccagatgatgcacctgcatccttgtatatcttccctacaattcaaccaaccacacacaaatt |
34607566 |
T |
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| Q |
342 |
aatcataaagtgtgt |
356 |
Q |
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| T |
34607567 |
aatcataaagtgtgt |
34607581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 34607199 - 34607243
Alignment:
| Q |
8 |
gataagtcacacacacaagtggaagaagctggaaagaaatgagta |
52 |
Q |
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| T |
34607199 |
gataagtcacacacacaagtggaagaagctggaaagaaatgagta |
34607243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 60 - 265
Target Start/End: Complemental strand, 24833058 - 24832853
Alignment:
| Q |
60 |
taccatgttattagtgacaagcctcaataagagggcagccacgaaagaaccaagaagttgagcaacccaatagtagacagctctaaggacagagattcta |
159 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| | || ||| ||||||||||||| ||||||||||||||| | |||||||||||| || |
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| T |
24833058 |
taccatgttattagtgacaagcctaagcaagagggcagccacaatagcacctagaagttgagcaatccaatagtagacagcacgaaggacagagatcctg |
24832959 |
T |
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| Q |
160 |
ccaccaagaagagcaccaaaagtaacagcagggtttatatgtccaccagatacatgcatgctagatgatatagctgcaaatagtgaaaatgcatgagcta |
259 |
Q |
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| T |
24832958 |
ccacctatgagagcaccaaatgtcactgctggattgacatgaccaccagatacatgcatgctggaagacacagcagcaaatagagcaaatgcatgtgcta |
24832859 |
T |
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| Q |
260 |
gtgcaa |
265 |
Q |
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| T |
24832858 |
gtgcaa |
24832853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 406 - 519
Target Start/End: Complemental strand, 24832494 - 24832381
Alignment:
| Q |
406 |
agcaagggctgagccttctccagcaaagacaaagatgcaagttgagaaaaattcagctacggttgctcttatggaatctggatgatttgcctcatccatc |
505 |
Q |
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||||||| | ||||||||||||||||||||||||||| |||| || ||||||||||| ||| ||||| || ||||||||||| | |||||||| | | |
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| T |
24832494 |
agcaaggccagagccttctccagcaaagacaaagatgaaagtggaagcaaattcagctatggtagctctaatagaatctggatggtaagcctcatcaacc |
24832395 |
T |
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| Q |
506 |
cttccaaatgcata |
519 |
Q |
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| T |
24832394 |
cttccaaaagcata |
24832381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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