View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4958-Insertion-4 (Length: 417)

Name: NF4958-Insertion-4
Description: NF4958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4958-Insertion-4
NF4958-Insertion-4
[»] chr3 (1 HSPs)
chr3 (8-417)||(5997729-5998124)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 417
Target Start/End: Original strand, 5997729 - 5998124
Alignment:
Q  8 cgtatcaatggtgatattgtcaattacacaatgcgactcaattattcaaaagaccttaatcattcttagttcccttcatatggaattctaggctctagca 107  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5997729 cgtatcaatggtgatattgtcaattacacaatgcaactcaattattcaaaagaccttaatcattcttagttcccttcatatggaattctaggctctagca 5997828  T
Q  108 tataaattgcaaaagtagacatgttttacctgttctgattgacctaaacttctaaggaaacacttactaaaaagaatcttacaatatctgagatttttta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||     ||||||||| ||| ||||||    
T  5997829 tataaattgcaaaagtagacatgttttacctgttctgattgacctaaacatctaaggaaacacttattaaaaaga----gacaatatctaagaattttta 5997924  T
Q  208 aaataataagttcttatagaaaatgaattctgtcatttaacttgacttaaaaaacccataacaaagaaaaagggtttttcagtgactaaccacaacnnnn 307  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  5997925 aaataacaagttcttatagaagatgaattctgtcatttaacttgacttaaaaaacccataacaaagaaaaagggtttttcagtgactaaccacaa----- 5998019  T
Q  308 nnncaacaatcatgccttatctcactagagagaacaataaaaactcactatttttgcaa--ctcactcttataattgcctcttgaaattaatgatataaa 405  Q
       ||| ||  |  || ||    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  5998020 ---caaaaaaaaacccata----actagagagaacaataaaaactcactatttttgcaactctcactcttataattgcatcttgaaattaatgatataaa 5998112  T

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