View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4958-Insertion-6 (Length: 142)
Name: NF4958-Insertion-6
Description: NF4958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4958-Insertion-6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 3e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 1994711 - 1994846
Alignment:
| Q |
7 |
accttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaacttgtctcctttttctctcagccataatgtgatcttgtatctctg |
106 |
Q |
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| T |
1994711 |
accttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaacttgtctcctttttctctcagccataatgtgatcttgtatctctg |
1994810 |
T |
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| Q |
107 |
aagagcttctaagattcttggttcttttcttaattg |
142 |
Q |
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| T |
1994811 |
aagagcttctaagattcttggttcttttcttaattg |
1994846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 1987744 - 1987878
Alignment:
| Q |
7 |
accttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaacttgtctcctttttctctcagccataatgtgatcttgtatctctg |
106 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1987744 |
accttcttcaatccaggtatagtggcagacagtgctatgaacctttcagtaagaacttgtctcctttttctctcagccataatgtgatcttgcatctcac |
1987843 |
T |
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| Q |
107 |
aagagcttctaagattcttggttcttttcttaatt |
141 |
Q |
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| T |
1987844 |
aagagcttctaagattcttagttcttttcttaatt |
1987878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 95
Target Start/End: Complemental strand, 45130793 - 45130763
Alignment:
| Q |
65 |
gtctcctttttctctcagccataatgtgatc |
95 |
Q |
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| T |
45130793 |
gtctcctttttctctcagccataatgtgatc |
45130763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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