View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4958_high_1 (Length: 661)

Name: NF4958_high_1
Description: NF4958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4958_high_1
NF4958_high_1
[»] chr3 (1 HSPs)
chr3 (27-649)||(5997103-5997723)


Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 27 - 649
Target Start/End: Complemental strand, 5997723 - 5997103
Alignment:
Q  27 ttttgatcagtatggtaaagttgtaagcgattccacaacttttattgcacactttatactgactgaaagaacttctcatgtttgttctatactgattgta 126  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5997723 tttttatcagtatggtaaagttgtaagcgattccacaacttttattgcacactttatactgactgaaagaacttctcatgtttgttctatactgattgta 5997624  T
Q  127 ataaatgctattatggaaataatgtggtcaattttttaaatcacaatcacggttagtggtgatcctggatattatggnnnnnnnnnnnnnnnnncacggt 226  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||                 ||||||    
T  5997623 ataaatgctattatggaaataatgtggtcaattttttaaatcgcaatcacggttagtggtgatcctggatattatggaaaaaaacatgaaaaaacacggt 5997524  T
Q  227 caatgttgctactttttgctgttgcgatgcggttgctgagatttgaaaaaccttcacattgagtctgtatttgtggttataggcacacacaatatagtaa 326  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  5997523 caatgtagctactttttgctgttgcgatgcggttgctgagagttgaaaaaccttcacattgagtttgtatttgtggttataggcacacagaatatagtaa 5997424  T
Q  327 atcatgataaggttgttacaggcacacacaatatagtaaataggtgcatttgttgtagcagtttttaagatattgtcgaatctttattgccttgctg-tt 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  5997423 atcatgataaggttgttacaggcacacacaatatagtaaataggtgcatttgttgtagcagtttttaagatattgttgaatctttattgccttgctgttt 5997324  T
Q  426 ttctgacaataacaaccaaagta-nnnnnnnnnccgatagacttggctaaatgcatctaatgatgttgtaacgtgaaagtcctatcatgaaacttactta 524  Q
    |||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    |||||    
T  5997323 ttctgacaataacaaccaaagtattttttttttccgatagacttggctaaatgcatctaatgatgttgtaatgtgaatgtcctatcatgaa----actta 5997228  T
Q  525 ctgtttctctaagttctaatannnnnnnctttgcaaaacttgaagtttcacgcaggaaagaatgtagggattggtaaggaccataccattttctccctaa 624  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5997227 ctgtttctctaagttctaatatttttttctttgcaaaacttgaagtttcacgcaggaaagaatgtagggattggtaaggaccataccattttctccctaa 5997128  T
Q  625 ttgatggagttgtaaaatttgagaa 649  Q
    |||||||||||||||||||||||||    
T  5997127 ttgatggagttgtaaaatttgagaa 5997103  T

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