View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4958_low_2 (Length: 441)

Name: NF4958_low_2
Description: NF4958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4958_low_2
NF4958_low_2
[»] chr5 (2 HSPs)
chr5 (12-422)||(16469576-16469990)
chr5 (324-394)||(38233327-38233397)
[»] chr6 (3 HSPs)
chr6 (34-218)||(6071470-6071648)
chr6 (280-388)||(6071316-6071424)
chr6 (354-397)||(6891414-6891457)
[»] chr3 (2 HSPs)
chr3 (23-209)||(27521132-27521305)
chr3 (95-158)||(2179017-2179080)
[»] chr8 (1 HSPs)
chr8 (336-394)||(35066252-35066310)
[»] scaffold0728 (1 HSPs)
scaffold0728 (312-416)||(424-526)
[»] chr4 (2 HSPs)
chr4 (319-395)||(7705373-7705449)
chr4 (346-393)||(22119307-22119354)
[»] scaffold0204 (1 HSPs)
scaffold0204 (261-363)||(11558-11660)
[»] chr2 (1 HSPs)
chr2 (324-374)||(14144289-14144339)


Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 422
Target Start/End: Complemental strand, 16469990 - 16469576
Alignment:
Q  12 atcatcacacctatagaaccatcattgcaacaaagtacaaaaggtcagattgtatcatatgaacatgtttcctctcagataa----ctcgtattgaacag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  16469990 atcatcacacctatagaaccatcattgcaacaaagtacaaaaggtcagattgtatcatatgaacatgtttcctctcagataattaactcgtattgaacag 16469891  T
Q  108 cctccaaagtcaagcacctcttttcattttccattatcaaatgtcaacgatgatattgtcgattcttctgccttggttggatagaatggtaatgaggaac 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16469890 cctccaaactcaagcacctcttttcattttccattatcaaatgtcaacgatgatattgtcgattcttctgccttggttggatagaatggtaatgaggaac 16469791  T
Q  208 attttattttggaaccagtagaaaac-atggtaattgttaagtctcctagcatgatcattcctacagaagcaattgtgcctttggagcctatagaggtag 306  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16469790 attttattttggaaccagtagaaaaatatggtaattgttaagtctcctagcatgatcattcctacagaagcaattatgcctttggagcctatagaggtag 16469691  T
Q  307 cagcacatattgatccacaactttagaaggaacttgactttgttagagaatatcttattcaaggtaaagatgtggacgtcccctttacatcattttttga 406  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |    
T  16469690 catcacatattgatccacaactttagaaggaacttgactttgttagagaatatcttattcgaggtaaagatgtggacgtcccctttaca-ccttttttaa 16469592  T
Q  407 cgaagaagcaaaaagt 422  Q
     |||||||||||||||    
T  16469591 tgaagaagcaaaaagt 16469576  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 394
Target Start/End: Original strand, 38233327 - 38233397
Alignment:
Q  324 caactttagaaggaacttgactttgttagagaatatcttattcaaggtaaagatgtggacgtcccctttac 394  Q
    |||||| | |||||||||||  |||||||||||| ||||||| ||||| ||||||| || |||||||||||    
T  38233327 caacttcaaaaggaacttgatcttgttagagaatgtcttattaaaggtgaagatgttgaggtcccctttac 38233397  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 218
Target Start/End: Complemental strand, 6071648 - 6071470
Alignment:
Q  34 cattgcaacaaagtacaaaaggtcagattgtatcatatgaacatgtttcctctcagataactcgtattgaacagcctccaaagtcaagcacctcttttca 133  Q
    ||||||||||| ||||||||||||| | ||||||||||||||| ||| |||| || ||| ||||| ||||  | ||||||||||||||||| ||          
T  6071648 cattgcaacaaggtacaaaaggtcacactgtatcatatgaacacgttgcctcccaaatagctcgtcttgagtaacctccaaagtcaagcacatc------ 6071555  T
Q  134 ttttccattatcaaa-tgtcaacgatgatattgtcgattcttctgccttggttggatagaatggtaatgaggaacattttattttg 218  Q
     |||||||||||||| |||||  ||||||||||| ||| ||| || |||||||||| | ||| ||||| |  ||||||||||||||    
T  6071554 -tttccattatcaaattgtcactgatgatattgttgatacttatggcttggttggacaaaatcgtaatcacaaacattttattttg 6071470  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 388
Target Start/End: Complemental strand, 6071424 - 6071316
Alignment:
Q  280 ttgtgcctttggagcctatagaggtagcagcacatattgatccacaactttagaaggaacttgactttgttagagaatatcttattcaaggtaaagatgt 379  Q
    ||||||||||||| |  ||| ||| ||| || |||||||||   |||||| ||||||||||| |  |||||||  |||||||||||||||||||| ||||    
T  6071424 ttgtgcctttggaacacataaaggcagctgcgcatattgatatgcaacttcagaaggaacttaatcttgttagcaaatatcttattcaaggtaaaaatgt 6071325  T
Q  380 ggacgtccc 388  Q
     ||| ||||    
T  6071324 tgacatccc 6071316  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 6891414 - 6891457
Alignment:
Q  354 gaatatcttattcaaggtaaagatgtggacgtcccctttacatc 397  Q
    |||||||||||||||||||||||||| || ||| ||||||||||    
T  6891414 gaatatcttattcaaggtaaagatgttgatgtcgcctttacatc 6891457  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 27521132 - 27521305
Alignment:
Q  23 tatagaaccatcattgcaacaaagtacaaaaggtcagattgtatcatatgaacatgtttcctctcagataactcgtattgaacagcctccaaagtcaagc 122  Q
    |||| |||||||||||||| || |||||||||||||||   |||||||||||| |||| |||||  |||| ||||||||||||| ||                 
T  27521132 tatataaccatcattgcaataaggtacaaaaggtcagaccatatcatatgaacttgttgcctcttggatagctcgtattgaacaacca------------ 27521219  T
Q  123 acctcttttcattttccattatcaaatgtcaacgatgatattgtcgattcttc--tgccttggttggatagaatggtaatgaggaacat 209  Q
       |||||||||||| |||||||||||||||  ||||||||||||||| ||||  || |||||||||  | |||||||||||| |||||    
T  27521220 ---tcttttcatttttcattatcaaatgtcacagatgatattgtcgatacttccatggcttggttggccaaaatggtaatgagcaacat 27521305  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 2179017 - 2179080
Alignment:
Q  95 tcgtattgaacagcctccaaagtcaagcacctcttttcattttccattatcaaatgtcaacgat 158  Q
    ||||||||| ||||| ||||||||||||||||| ||| | ||||| ||||||||||||| ||||    
T  2179017 tcgtattgagcagcccccaaagtcaagcacctccttttactttcctttatcaaatgtcaccgat 2179080  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 394
Target Start/End: Complemental strand, 35066310 - 35066252
Alignment:
Q  336 gaacttgactttgttagagaatatcttattcaaggtaaagatgtggacgtcccctttac 394  Q
    ||||||||  ||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  35066310 gaacttgatcttgttagagaatatcttcttcaaggtaaagatgttgacgtcccttttac 35066252  T

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Target: scaffold0728 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 416
Target Start/End: Complemental strand, 526 - 424
Alignment:
Q  312 catattgatccacaactttagaaggaacttgactttgttagagaatatcttattcaaggtaaagatgtggacgtcccctttacatcattttttgacgaag 411  Q
    |||||||||||| ||||| | |||||| |||| ||||||||  |||| | |||||||||||||||||   |||||||||||||| | || ||||||||||    
T  526 catattgatccataacttcataaggaaattga-tttgttagcaaataccatattcaaggtaaagatgctaacgtcccctttaca-ccttatttgacgaag 429  T
Q  412 aagca 416  Q
    |||||    
T  428 aagca 424  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 7705373 - 7705449
Alignment:
Q  319 atccacaactttagaaggaacttgactttgttagagaatatcttattcaaggtaaagatgtggacgtcccctttaca 395  Q
    |||| |||||| |||||||||||||  | ||||||||||||| ||||||||||||  |||| || ||||||||||||    
T  7705373 atccgcaacttcagaaggaacttgatctagttagagaatatcctattcaaggtaactatgttgatgtcccctttaca 7705449  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 393
Target Start/End: Original strand, 22119307 - 22119354
Alignment:
Q  346 ttgttagagaatatcttattcaaggtaaagatgtggacgtccccttta 393  Q
    |||||||| ||||||||||||||| ||||||||| |||||||| ||||    
T  22119307 ttgttagaaaatatcttattcaagataaagatgtcgacgtccctttta 22119354  T

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Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 363
Target Start/End: Original strand, 11558 - 11660
Alignment:
Q  261 atcattcctacagaagcaattgtgcctttggagcctatagaggtagcagcacatattgatccacaactttagaaggaacttgactttgttagagaatatc 360  Q
    ||||||||||||||||||| |||||||||||| | || | |||| |  ||||||||||||   |||||||| ||| |||||||  |||||||  ||||||    
T  11558 atcattcctacagaagcaagtgtgcctttggaacatacaaaggtggttgcacatattgatatgcaactttataagaaacttgatcttgttagcaaatatc 11657  T
Q  361 tta 363  Q
    |||    
T  11658 tta 11660  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 14144339 - 14144289
Alignment:
Q  324 caactttagaaggaacttgactttgttagagaatatcttattcaaggtaaa 374  Q
    |||||| | |||||||||||  ||||||| |||||||||||||||||||||    
T  14144339 caacttcaaaaggaacttgatcttgttagcgaatatcttattcaaggtaaa 14144289  T

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