View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4958_low_3 (Length: 312)

Name: NF4958_low_3
Description: NF4958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4958_low_3
NF4958_low_3
[»] chr5 (2 HSPs)
chr5 (14-293)||(16469576-16469855)
chr5 (195-265)||(38233327-38233397)
[»] chr8 (1 HSPs)
chr8 (207-265)||(35066252-35066310)
[»] scaffold0728 (1 HSPs)
scaffold0728 (183-287)||(424-526)
[»] chr4 (2 HSPs)
chr4 (190-266)||(7705373-7705449)
chr4 (217-264)||(22119307-22119354)
[»] scaffold0204 (1 HSPs)
scaffold0204 (132-234)||(11558-11660)
[»] chr6 (2 HSPs)
chr6 (151-259)||(6071316-6071424)
chr6 (225-268)||(6891414-6891457)
[»] chr2 (1 HSPs)
chr2 (195-245)||(14144289-14144339)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 16469855 - 16469576
Alignment:
Q  14 atcaaatgtcaacgatgatattgtcgattcttctgccttggttggatagaatggtaatgaggaacattttattttggaaccagtagaaaac-atggtaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  16469855 atcaaatgtcaacgatgatattgtcgattcttctgccttggttggatagaatggtaatgaggaacattttattttggaaccagtagaaaaatatggtaat 16469756  T
Q  113 tgttaagtctcctagcatgatcattcctacagaagcaattgtgcctttggagcctatagaggtagcagcacatattgatccacaactttagaaggaactt 212  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16469755 tgttaagtctcctagcatgatcattcctacagaagcaattatgcctttggagcctatagaggtagcatcacatattgatccacaactttagaaggaactt 16469656  T
Q  213 gactttgttagagaatatcttattcaaggtaaagatgtggacgtcccctttacatcattttttgacgaagaagcaaaaagt 293  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| | |||||||||||||||    
T  16469655 gactttgttagagaatatcttattcgaggtaaagatgtggacgtcccctttaca-ccttttttaatgaagaagcaaaaagt 16469576  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 38233327 - 38233397
Alignment:
Q  195 caactttagaaggaacttgactttgttagagaatatcttattcaaggtaaagatgtggacgtcccctttac 265  Q
    |||||| | |||||||||||  |||||||||||| ||||||| ||||| ||||||| || |||||||||||    
T  38233327 caacttcaaaaggaacttgatcttgttagagaatgtcttattaaaggtgaagatgttgaggtcccctttac 38233397  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 35066310 - 35066252
Alignment:
Q  207 gaacttgactttgttagagaatatcttattcaaggtaaagatgtggacgtcccctttac 265  Q
    ||||||||  ||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  35066310 gaacttgatcttgttagagaatatcttcttcaaggtaaagatgttgacgtcccttttac 35066252  T

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Target: scaffold0728 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 526 - 424
Alignment:
Q  183 catattgatccacaactttagaaggaacttgactttgttagagaatatcttattcaaggtaaagatgtggacgtcccctttacatcattttttgacgaag 282  Q
    |||||||||||| ||||| | |||||| |||| ||||||||  |||| | |||||||||||||||||   |||||||||||||| | || ||||||||||    
T  526 catattgatccataacttcataaggaaattga-tttgttagcaaataccatattcaaggtaaagatgctaacgtcccctttaca-ccttatttgacgaag 429  T
Q  283 aagca 287  Q
    |||||    
T  428 aagca 424  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 266
Target Start/End: Original strand, 7705373 - 7705449
Alignment:
Q  190 atccacaactttagaaggaacttgactttgttagagaatatcttattcaaggtaaagatgtggacgtcccctttaca 266  Q
    |||| |||||| |||||||||||||  | ||||||||||||| ||||||||||||  |||| || ||||||||||||    
T  7705373 atccgcaacttcagaaggaacttgatctagttagagaatatcctattcaaggtaactatgttgatgtcccctttaca 7705449  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 22119307 - 22119354
Alignment:
Q  217 ttgttagagaatatcttattcaaggtaaagatgtggacgtccccttta 264  Q
    |||||||| ||||||||||||||| ||||||||| |||||||| ||||    
T  22119307 ttgttagaaaatatcttattcaagataaagatgtcgacgtccctttta 22119354  T

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Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 11558 - 11660
Alignment:
Q  132 atcattcctacagaagcaattgtgcctttggagcctatagaggtagcagcacatattgatccacaactttagaaggaacttgactttgttagagaatatc 231  Q
    ||||||||||||||||||| |||||||||||| | || | |||| |  ||||||||||||   |||||||| ||| |||||||  |||||||  ||||||    
T  11558 atcattcctacagaagcaagtgtgcctttggaacatacaaaggtggttgcacatattgatatgcaactttataagaaacttgatcttgttagcaaatatc 11657  T
Q  232 tta 234  Q
    |||    
T  11658 tta 11660  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 6071424 - 6071316
Alignment:
Q  151 ttgtgcctttggagcctatagaggtagcagcacatattgatccacaactttagaaggaacttgactttgttagagaatatcttattcaaggtaaagatgt 250  Q
    ||||||||||||| |  ||| ||| ||| || |||||||||   |||||| ||||||||||| |  |||||||  |||||||||||||||||||| ||||    
T  6071424 ttgtgcctttggaacacataaaggcagctgcgcatattgatatgcaacttcagaaggaacttaatcttgttagcaaatatcttattcaaggtaaaaatgt 6071325  T
Q  251 ggacgtccc 259  Q
     ||| ||||    
T  6071324 tgacatccc 6071316  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 6891414 - 6891457
Alignment:
Q  225 gaatatcttattcaaggtaaagatgtggacgtcccctttacatc 268  Q
    |||||||||||||||||||||||||| || ||| ||||||||||    
T  6891414 gaatatcttattcaaggtaaagatgttgatgtcgcctttacatc 6891457  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 14144339 - 14144289
Alignment:
Q  195 caactttagaaggaacttgactttgttagagaatatcttattcaaggtaaa 245  Q
    |||||| | |||||||||||  ||||||| |||||||||||||||||||||    
T  14144339 caacttcaaaaggaacttgatcttgttagcgaatatcttattcaaggtaaa 14144289  T

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