View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4959-Insertion-1 (Length: 962)
Name: NF4959-Insertion-1
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4959-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Complemental strand, 29096070 - 29095550
Alignment:
| Q |
8 |
aaatgaaaataaatcaaagaaagaaaatgtagagattcttatttagtttagaatcgactaatctcaccaccaaataacgtagatcttggtatgatggtga |
107 |
Q |
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| T |
29096070 |
aaatgaaaataaatcaaagaaagaaaatgtagagattcttatttagtttagaatcgactaacctcaccaccaaataacgtaggtcttggtatgatggtga |
29095971 |
T |
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| Q |
108 |
gtgaaccttcaagaaactcaacggcacgtccgtacgagcctctcccgtaagctttcttgcccaaatcatacatcaactgagctgttgccctcctctctgc |
207 |
Q |
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| T |
29095970 |
gtgcaccttcaagaaactcaacggcacgtccgtacgagcctctcccgtaagctttcttgcccaaatcatacatcaactgagctgttgccctcctctctgc |
29095871 |
T |
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| Q |
208 |
ctgctccttagccacctgattcgtcaaaccacaatcaatgtgtcaacgactgccaatttaatcatc-accctcaaccctagaggagaaaaataatgtcat |
306 |
Q |
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| T |
29095870 |
ctgctccttagccacctgatttgtcaaaccacaaactatgtgtcaacgagtgccaatttaaccatataccctcaaccctagaagagaaaaataatgtcat |
29095771 |
T |
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| Q |
307 |
ctcaacaatttttagagacattagggtctctttggtattatagaacattttctgttttcagttcatgttttcatgtcaccttactttcactatgtttcat |
406 |
Q |
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| T |
29095770 |
ctcaacaatttttagagacattagggtctctttggtattatagaacattttctgttttcagttcatgttttcatgccaccttactttcactatgtttcat |
29095671 |
T |
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| Q |
407 |
gcgtacaaatatttgtttaggaaacaatgaacaaaactataaattgaaaataagaagcaatgttaagtaattaagagtgaaaataaagaagtaatgtaat |
506 |
Q |
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| T |
29095670 |
gcgtacaaatatttgtttaggaaacaatgaacacaactataaattgaaaataagaagcaatgtaaagtaattaagagtgaaaataaagaagtaatgtaat |
29095571 |
T |
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| Q |
507 |
taagaatgaaaacaagactca |
527 |
Q |
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| T |
29095570 |
taagaatgaaaacaagactca |
29095550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 592 - 750
Target Start/End: Complemental strand, 29095487 - 29095331
Alignment:
| Q |
592 |
ggctcttatccaaccaagtagagttgtttgcaccatacaatattacaatccaccttaatgttgcatatctagtgacttgttagttgatgattttgtctag |
691 |
Q |
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| T |
29095487 |
ggctcttatccaaccaagtagagttgtttgcaccatacaatattacaatctaccttaatgtttcatatctagtgacttgttagttgatgattttgtcta- |
29095389 |
T |
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| Q |
692 |
gttctctagagataaaatgttcacaaacttcaactagagctgacttaaataatgtatgt |
750 |
Q |
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| T |
29095388 |
gttctctagagat-aaatgttcacaaacttcaactagagctgacttaaataatgcatgt |
29095331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 784 - 943
Target Start/End: Complemental strand, 29095299 - 29095143
Alignment:
| Q |
784 |
tatcaccgcacaagtttgaaggagtaaca-taagtgtgtgcaaaaattctttcctaaacataaccaatcaaaccattagcgtatattnnnnnnntataac |
882 |
Q |
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| T |
29095299 |
tatcaccacacaagtttgaag-agtaacaataagtgtgtgcaaaaattctttcctaaacataaccaatcaaaccattagcgtatatt-aaaacatataaa |
29095202 |
T |
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| Q |
883 |
catatacactctcccatctcttttttaaaattttctgggaaaaacaaccgggacgactcaa |
943 |
Q |
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| T |
29095201 |
catatacactct-ccatctctctttttagactttatgggaaaaac-acccggacgactcaa |
29095143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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