View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4959-Insertion-10 (Length: 363)
Name: NF4959-Insertion-10
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4959-Insertion-10 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 363
Target Start/End: Complemental strand, 4658084 - 4657729
Alignment:
| Q |
7 |
agaaatatcatcttcagttatatgggtcccctacccttctgctcccacgatttgaaagcatgtgagatttttggtcaaaatttccaggctatgttcagaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4658084 |
agaaatatcatcttcagttatatgggtcccctacccttctgctcccacgatttgaaagcatgtgagatttttggtcaaaatttccaggctatgttcagaa |
4657985 |
T |
|
| Q |
107 |
acactcgagtttacgaatttcaagagctttcacaacccgtcactcacacatcagtcacattactcgtaatagtcaataatccagaattaattaatgacct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4657984 |
acactcgagtttacgaatttcaagagctttcacaacccgtcactcacacatcagtcacattactcttaatagtcaataatccagaattaattaatgacct |
4657885 |
T |
|
| Q |
207 |
cgttttaatttcagtgatattagtaataataataaaacaaaactattgagaatgaatattgaattgaatatattaagaaaaaagataaagtactactact |
306 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4657884 |
cgttttaatttcagtgatattagtaat-ataataaaacaaaactattgagaatgaatattgaattgaatatattaagagaaaagataaagtactactact |
4657786 |
T |
|
| Q |
307 |
actcaccagggaagatccgaaggggtccattgcaaagtgtatttagctgtgtttcta |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4657785 |
actcaccagggaagatccgaaggggtccattgcaaagtgtatttagctgtgtttcta |
4657729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 1038349 - 1038461
Alignment:
| Q |
9 |
aaatatcatcttcagttatatgggtcccctacccttctgctcccacgatttgaaagcatgtgagatttttggtcaaaatttccaggctatgttcagaaac |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1038349 |
aaatatcatcttcacttatatgggtccc-tacccttctgctcccacgatttgaaagcatgtgagatttttggtcaaaatttccag--tatgttcagaaac |
1038445 |
T |
|
| Q |
109 |
actcgagtttacgaat |
124 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1038446 |
actcgagtttacgaat |
1038461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 1045255 - 1045367
Alignment:
| Q |
9 |
aaatatcatcttcagttatatgggtcccctacccttctgctcccacgatttgaaagcatgtgagatttttggtcaaaatttccaggctatgttcagaaac |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1045255 |
aaatatcatcttcacttatatgggtccc-tacccttctgctcccacgatttgaaagcatgtgagatttttggtcaaaatttccag--tatgttcagaaac |
1045351 |
T |
|
| Q |
109 |
actcgagtttacgaat |
124 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1045352 |
actcgagtttacgaat |
1045367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University