View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4959-Insertion-2 (Length: 706)
Name: NF4959-Insertion-2
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4959-Insertion-2 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 8 - 706
Target Start/End: Original strand, 33397497 - 33398193
Alignment:
| Q |
8 |
attttagggtaactgatatccaattgttggaggaaagggagggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33397497 |
attttagggtaactgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtga |
33397596 |
T |
|
| Q |
108 |
gagaggttaaggttgatttagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgggagag |
207 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33397597 |
gagaggtcaaggttgatttagtgtttttgagaatagtttgcaatcctaacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgggagag |
33397696 |
T |
|
| Q |
208 |
ggaaacagaacgggggattcgagagagaagaatgtttgtgtcaccgcggaagcacgagaggtcaagtgaagtaagatttgggaacctttggaagagacga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33397697 |
ggaaacagaacgggggattcgagagagaagaatgtttgtgtcaccgcggaagcacgagaggtcaagtgaagtaagatttgggaacctttggaagagacga |
33397796 |
T |
|
| Q |
308 |
gagaaggatgatggattgtagattaatgtgacggaatgcacagaacggtttgttacgtcgagtagttgtttggacacaagggatagagtctctaagtaat |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33397797 |
gagaaggatgatggattgtagattaatgtgacggaatgcacagaacggtttgttacgtcgagtagttgtttggacacaagggatagagtctctaagtaat |
33397896 |
T |
|
| Q |
408 |
gattactgttctcaacgttgaggttgttaaggagtttggataacacatattcccagcaatcatcctgtaaacctgctcctgcaattcttcttctggaacc |
507 |
Q |
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| T |
33397897 |
gattacggttctcaacgttgaggttgttaaggagtttggataacacatattcccagcaatcatcctgtaaacctgctcctgcaattctttttctggaacc |
33397996 |
T |
|
| Q |
508 |
catttctttcttctccttaaccctaactcttcgattcgattcgattcgattgtgtttctttagcccagagttgattggattggagtatattatatactag |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33397997 |
catttctttcttctccttaaccctaactcttcgattcgattc-tgtcgattgtgtttctttagcccagagttgattggattggagtatattatatactag |
33398095 |
T |
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| Q |
608 |
tgcttagcgcgttctgttcataaatcgtgg-aaaacaaaaccacctcagtcctgtctctgtcaataatttatttatgtccgcttatctttcttctttctt |
706 |
Q |
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| T |
33398096 |
tacttagcgtgttctgttcataaatcgtggaaaaacaaaaccacctcagtcctg--tctgtcaataatttatttatgtccgcttatctttcttctttctt |
33398193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 27004866 - 27004581
Alignment:
| Q |
9 |
ttttagggtaactgatatccaattgttggaggaaagggagggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgag |
108 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| |||| ||||| || || |||||||||| ||| ||| ||||||| | || |||||||| ||||| |
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| T |
27004866 |
ttttagggaaactgatatccaattgttggaggaaggggaatgaatctgcgatcaaggatatgtgagtgtggcatagagaagccatattggaacatgtgag |
27004767 |
T |
|
| Q |
109 |
agaggttaaggttgatt------tagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgg |
202 |
Q |
| |
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| T |
27004766 |
agaggtcaaggtggatttagtagtagtctttttgagaagagtttgcaaccctaagacggggaaggtggtgtggttggagaggttgagggatgtgaga--- |
27004670 |
T |
|
| Q |
203 |
gagagggaaacagaacgggggattcgagagagaagaatgtttgtgtcaccgcggaagcacgagaggtcaagtgaagtaagatttgggaacctttg |
297 |
Q |
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| T |
27004669 |
------gtaatagaagcggggattcgagagagaagagcgtttaggtcaccgcggaagctggagaggtcgagggatgtgagattttggaacctttg |
27004581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 36876584 - 36876698
Alignment:
| Q |
9 |
ttttagggtaactgatatccaattgttggaggaaagggagggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgag |
108 |
Q |
| |
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|||| ||| |||||||||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
36876584 |
ttttggggaaactgatatccagttgttggaggaaaggaaaagaatgagcaatgaaggatatgtcagtatggtatagagagccaatgttggaacatgtgag |
36876683 |
T |
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| Q |
109 |
agaggttaaggttga |
123 |
Q |
| |
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| T |
36876684 |
agaggtcaaggttga |
36876698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 303
Target Start/End: Complemental strand, 33713837 - 33713659
Alignment:
| Q |
116 |
aaggttgatttagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgggagagggaaacag |
215 |
Q |
| |
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|||||||||||| | |||||||||| || | |||||||| || ||||| ||||||||||| ||||||||||| || ||||| ||||||| |
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| T |
33713837 |
aaggttgatttattatttttgagaagagctcgcaaccctaactcagggaaggtggggtggttggagaggttgagggaagtgag---------ggaaacaa |
33713747 |
T |
|
| Q |
216 |
aacgggggattcgagagagaagaatgtttgtgtcaccgcggaagcacgagaggtcaagtgaagtaagatttgggaacctttggaagag |
303 |
Q |
| |
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|| | ||||||||||||||||| ||||| |||||||| |||||| || ||||| || || || |||||||||||| |||||||||| |
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| T |
33713746 |
aatgagggattcgagagagaagtgtgtttaggtcaccgcagaagcatgaaaggtcgagggaggtgagatttgggaacatttggaagag |
33713659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 281 - 403
Target Start/End: Complemental strand, 33707864 - 33707742
Alignment:
| Q |
281 |
agatttgggaacctttggaagagacgagagaaggatgatggattgtagattaatgtgacggaatgcacagaacggtttgttacgtcgagtagttgtttgg |
380 |
Q |
| |
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||||||||||||||||||||||| ||||||| | | ||| |||||| |||||| | | ||||| | ||||| ||| || ||| ||||| |||||||| |
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| T |
33707864 |
agatttgggaacctttggaagaggcgagagagtggtaatgtattgtatattaatctcaaggaatatatagaactgttggtgacggagagtaattgtttgg |
33707765 |
T |
|
| Q |
381 |
acacaagggatagagtctctaag |
403 |
Q |
| |
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| ||||||||||||||||||||| |
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| T |
33707764 |
atacaagggatagagtctctaag |
33707742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 405
Target Start/End: Complemental strand, 37579803 - 37579535
Alignment:
| Q |
128 |
gtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgggagagggaaacagaacgggggattc |
227 |
Q |
| |
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||||||||||||||||| ||||||||| | |||||| ||||||||||| |||||||||||||| || || |||| || | |||| || |
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| T |
37579803 |
gtgtttttgagaatagtctgcaaccctaatacggggaaggtggggtggttggagaggttgagagaagt---------gatggaacaccaaggagggaatc |
37579713 |
T |
|
| Q |
228 |
gagagagaagaatgtttgtgtcaccgcggaagcacgagaggtcaagtgaagtaagatttgggaacctttggaagagacgagagaaggatgatggattgta |
327 |
Q |
| |
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|||||||||| ||||| |||||||||||||| |||||||| || || | || |||||||||||||||||||| | | ||| | |||||||| | |
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| T |
37579712 |
gagagagaagtgtgtttaggtcaccgcggaagccagagaggtcgagggatttgaggtttgggaacctttggaagaggcaatagagtggccatggattgca |
37579613 |
T |
|
| Q |
328 |
gattaatgtgacggaatgcacagaacggtttgttacgtcgagtagttgtttggacacaagggatagagtctctaagta |
405 |
Q |
| |
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|||||||| | ||||| |||||||||||||| | | ||| | |||||||| |||||||||||||| |||||||| |
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| T |
37579612 |
gattaatgctaaggaataaacagaacggtttgtgatggagaggaactgtttggaaacaagggatagagtatctaagta |
37579535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 261
Target Start/End: Complemental strand, 33708024 - 33707867
Alignment:
| Q |
95 |
ttggaacaagtgagagaggttaaggttgatttagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatg |
194 |
Q |
| |
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||||||||| |||| ||||| |||||||||||| | |||||||||| | | |||||||| || |||||| ||||||||||| ||||||||||| || | |
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| T |
33708024 |
ttggaacaaatgagggaggtcaaggttgatttattatttttgagaagaactcgcaaccctaactcggggaaggtggggtggttggagaggttgagggaag |
33707925 |
T |
|
| Q |
195 |
tgagacgggagagggaaacagaacgggggattcgagagagaagaatgtttgtgtcaccgcggaagca |
261 |
Q |
| |
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| ||||||||||||| | ||||||||||||||||| ||||| |||||| | |||||| |
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| T |
33707924 |
t---------gagggaaacagaatgagggattcgagagagaagtgtgtttaggtcaccaccgaagca |
33707867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 489
Target Start/End: Complemental strand, 37579515 - 37579466
Alignment:
| Q |
440 |
agtttggataacacatattcccagcaatcatcctgtaaacctgctcctgc |
489 |
Q |
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|||||||||| |||||||||||||||||| ||| ||||||| ||||||| |
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| T |
37579515 |
agtttggatatcacatattcccagcaatcgtccggtaaaccacctcctgc |
37579466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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